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22 search results found

Deep Learning Toolkit for Medical Image Analysis

Braindecode ⭐ 638

Deep learning software to decode EEG, ECG or MEG signals

Brainchop ⭐ 208

Brainchop: In-browser 3D MRI rendering and segmentation

Clinicadl ⭐ 146

Framework for the reproducible processing of neuroimaging data with deep learning methods

Awesome Deepneuroimage ⭐ 139

A curated list of awesome deep learning applications in the field of neurological image analysis

Livianet ⭐ 133

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

Deepneuro ⭐ 90

A deep learning python package for neuroimaging data. Made by:

Cortex_old ⭐ 32

Cortex - Deep learning tools for neuroimaging

Assemblynet ⭐ 31

AssemblyNet: 3D Whole Brain MRI segmentation pipeline

Niftytorch.doc ⭐ 29

A Python API for deploying deep neural networks for Neuroimaging research. Powered by IMG at Stevens Neuroimaging and Informatics Institute, KSOM, USC.

Hippmapp3r ⭐ 27

AICONSlab's hippocampal segmentation algorithm using CNNs

Awesome Medical Imaging ⭐ 26

Awesome list of software that I use to do research in medical imaging.

BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collaboration in neuroscience research.

Easylearn_dev ⭐ 20

Easylearn is designed for machine learning mainly in resting-state fMRI, radiomics and other fields (such as EEG). Easylearn is built on top of scikit-learn, pytorch and other packages. Easylearn can assist doctors and researchers who have limited coding experience to easily realize machine learning, e.g., (MR/CT/PET/EEG)imaging-marker- or other biomarker-based disease diagnosis and prediction, treatment response prediction, disease subtyping, dimensional decoding for transdiagnostic psychiatri

Brainmage ⭐ 20

Brain extraction in presence of abnormalities, using single and multiple MRI modalities

Acerta Abide ⭐ 17

Deep learning using the ABIDE data

Deep neural network (DNN) with weight sparsity control (i.e., L1-norm regularization) improved the classification performance using whole-brain resting-state functional connectivity patterns of schizophrenia patient and healthy groups.

Fast brain extraction using neural networks

Nmpevqvae ⭐ 13

Neuromorphologicaly Preserving Volumetric Data Encoding Using VQ-VAE

Icvmapp3r ⭐ 12

AICONSlab's brain extraction (skull-stripping) algorithm using CNNs

Deepsccan ⭐ 12

Deep & Sparse CCA for Neuroimaging in Tensorflow

Hypermapp3r ⭐ 11

AICONSlab's white matter hyperintensities (WMH) segmentation algorithm using CNNs

Neural_pre_processing ⭐ 11

Neural Pre Processing is an end-to-end weakly supervised learning approach for converting raw head MRI images to intensity-normalized, skull-stripped brain in a standard coordinate space

Mri Deface Detector ⭐ 11

Deface Detector for MRI images.

Meg Group Decode ⭐ 10

Train Wavenet-based group-level models on MEG data, and uncover neuroscientifically interpretable information.

AICONSlab's DL benchmarking platform to OOD data in MRI

Rapid, topologically-correct cortical surface reconstruction

Normative Modelling Using Deep Autoencoders ⭐ 6

Normative modelling using deep autoencoders: a multi-cohort study on mild cognitive impairment and Alzheimer’s disease

A deep learning python package for medical imaging data.

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