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30 search results found

Cs Video Courses ⭐ 62,887

List of Computer Science courses with video lectures.

Awesome Deepbio ⭐ 1,467

A curated list of awesome deep learning applications in the field of computational biology

Graphein ⭐ 932

Protein Graph Library

Openchem ⭐ 450

OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research

DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis

Deep Rules ⭐ 198

Ten Quick Tips for Deep Learning in Biology

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Deep_learning_papers ⭐ 175

A place to collect papers that are related to deep learning and computational biology

Variational Autoencoder for Dimensionality Reduction of Time-Series

Clairvoyante ⭐ 142

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

Fitness landscape exploration sandbox for biological sequence design.

Race and ethnicity Imputation from Disease history with Deep LEarning

Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

Source code for "Molecular Mechanics-Driven Graph Neural Network with Multiplex Graph for Molecular Structures"

Guideline For Computational Biology And Bioinformatics ⭐ 60

NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions

C.origami ⭐ 47

C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.

An Artificial Neural Network-based discriminator for validating clinically significant genomic variants

Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)

Regulatory Prediction ⭐ 24

Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on Computational Biology

Aptasuite ⭐ 20

A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.

MuRaL is a deep learning framework for estimating single-nucleotide mutation rates across the genome.

Sars Cov 2_b.1.1.529_spike Rbd_predictions ⭐ 14

AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions

DeepSEA in TensorFlow

Clair3 Trio ⭐ 12

Clair3-Trio: variant calling in trio using Nanopore long-reads

Repository for my research on generative modelling of cell images

CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning

This is a curated list of tutorials, projects, libraries, videos, papers, books and anything related to applications of Deep Learning to biomedicine. Feel free to make a pull request to contribute to this list.

Deep Learning Health Life Sciences ⭐ 8

Workshop on Deep Learning for Health and Life Sciences

Cdeepbind ⭐ 7

cDeepbind: A context sensitive deep learning model of RNA-protein binding

Paper Notes ⭐ 6

notes from machine learning, reinforcement learning and other papers

An implementation of multimodal deep neural network, a new model for human breast cancer prognosis prediction.

Cadena2019ploscb ⭐ 5

Code for Cadena, S. A, et al. (2019). Deep convolutional models improve predictions of macaque V1 responses to natural images. Plos Computational Biology

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