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7 search results found

Microassembly based somatic variant caller for NGS data

Pufferfish ⭐ 104

An efficient index for the colored, compacted, de Bruijn graph

Compacted and colored de Bruijn graph construction and querying

Mindthegap ⭐ 30

MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.

A collection of useful algorithms and data structures for bioinformatics

Genome Sequencing ⭐ 7

Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.

Sh Assembly ⭐ 5

K-mer counting with low memory consumption enables de novo assembly of 106x human sequence data in 2.7 hours

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