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Search results for database genomics

19 search results found

Cbioportal ⭐ 535

cBioPortal for Cancer Genomics

Postgui ⭐ 335

A React web application to query and share any PostgreSQL database.

Artemis ⭐ 191

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Genome_updater ⭐ 123

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

Pymatgen Db ⭐ 46

Pymatgen-db provides an addon to the Python Materials Genomics (pymatgen) library (https://pypi.python.org/pypi/pymatgen) that allows the creation of Materials Project-style databases for management of materials data.

Environmental DNA metabarcoding taxonomic identification

Recognizer ⭐ 24

A tool for domain based annotation with databases from the Conserved Domains Database

Order and orientation of complete bacterial genomes

Cmdbtools ⭐ 21

Command line tools for CMDB varaints browser

🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files

Mlst_check ⭐ 14

Multilocus sequence typing by blast using the schemes from PubMLST

Ultrafast sequence typing and gene detection from NGS raw reads

Genomehubs ⭐ 12

Search and explore genomic metadata, Earth BioGenome Project progress and assembly features

Viralrecall ⭐ 12

Detection of NCLDV signatures in 'omic data

Sequence Database Curator ⭐ 10

This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).

Cazy_webscraper ⭐ 10

Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.

Multiphate2 ⭐ 8

multiPhATE with comparative genomics

BanzaiDB is a tool for pairing Microbial Genomics Next Generation Sequencing (NGS) analysis with a NoSQL database.

Patric_tools ⭐ 5

Python package to interact with the PATRIC database (https://www.patricbrc.org)

Bioscripts ⭐ 5

some useful scripts for working with genomics and sequencing data

Wikigenomesbase ⭐ 5

A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.

ODG: Omics Database Generator - Integration toolkit for -omics data

Ncbi_august_hackathon_push_button_genomics_solution ⭐ 5

UPWARD: Uniting People Working Against Rare Diseases

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