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Rust Bio ⭐ 1,428

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

Megahit ⭐ 442

Ultra-fast and memory-efficient (meta-)genome assembler

Coursera Specializations ⭐ 68

Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

Geneticvariation.jl ⭐ 33

Datastructures and algorithms for working with genetic variation

GCLib - Genomic C++ library of reusable code for bioinformatics projects

Small general purpose library for C and Python with focus on bioinformatics.

Avxwindowfmindex ⭐ 24

A fast, AVX2 and ARM Neon accelerated FM index library

Bioinformatics Technology Lab common code library

Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.

Phylogenetics ⭐ 11

Algorithms and datastructures for phylogenetics

Newicktree.jl ⭐ 8

Newick formatted (phylogenetic) trees

Small general-purpose library for C and Python with an emphasis on bioinformatics.

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