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Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.

Peakachu ⭐ 42

Genome-wide contact analysis using sklearn

Rambutan ⭐ 20

Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.

Genomedisco ⭐ 18

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

(check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), also Marie-Nelly et al., 2013, PhD thesis (https://www.theses.fr/2013PA066714)

Nuc_processing ⭐ 11

Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools

Tgacbrowser ⭐ 10

TGAC's Genome Browser

The software for modeling the 3D structure of a genome using Hi-C chromosome conformation capturing data

Otagogalaxy ⭐ 5

1000 genomes and Merriman Lab Galaxy

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