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Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/g Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

Scalable long read self-correction and assembly polishing with multiple sequence alignment

Computational pipeline for calling consensi on R2C2 nanopore data

Sequence Manipulation ⭐ 26

A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats

Tidehunter ⭐ 22

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly

Tidehunter ⭐ 17

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

TEspeX - pipeline for Transposable Elements expression quantification

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

Flea Pipeline ⭐ 5

A pipeline for long-read sequencing data.

Scripts for analyzing 10x R2C2 data

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