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V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Virsorter ⭐ 66

Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)

Cenote Taker2 ⭐ 57

Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)

A package for designing activity-informed nucleic acid diagnostics for viruses.

Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.

Viromescan ⭐ 8

ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples from reads of other microorganisms.

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