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Search results for conda sequencing
conda
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sequencing
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30 search results found
Sarek
⭐
299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Sunbeam
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157
A robust, extensible metagenomics pipeline
V Pipe
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119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Mcclintock
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83
Meta-pipeline to identify transposable element insertions using next generation sequencing data
Stitch
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67
STITCH - Sequencing To Imputation Through Constructing Haplotypes
Catch
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63
A package for designing compact and comprehensive capture probe sets.
Ncov Tools
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44
Small collection of tools for performing quality control on coronavirus sequencing data and genomes
Grabseqs
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44
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
Ngspeciesid
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41
Reference-free clustering and consensus forming of long-read amplicon sequencing
Dadasnake
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37
Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
Wochenende
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30
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
Varianttools
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27
software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
Ezrun
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21
An R meta-package for the analysis of Next Generation Sequencing data
Natrix
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21
Open-source bioinformatics pipeline for the preprocessing of raw sequencing data.
Varvamp
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15
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Saffrontree
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14
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
Haploconduct
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11
Haplotype-aware genome assembly toolkit
Tostadas
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10
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Schavott
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9
Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing
Star Seqr
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9
RNA Fusion Detection and Quantification
2brad M
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8
Albatradis
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7
Comparative TraDIS analysis
Nanopore_ncm18
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7
Helpful scripts for working with Oxford Nanopore Sequencing data
Bashbone
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6
A bash/biobash library for workflow and pipeline design
Zga
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6
ZGA prokaryotic genome assembly and annotation pipeline
Pycosnake
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5
pycoSnake is a neatly wrapped collection of snakemake workflows for analysing nanopore and Illumina sequencing data
Seqcat
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5
A Bioconductor R-package for cell evaluation, characterisation and authentication using high throughput sequencing data.
Sepath_tool_uea
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5
SEPATH template pipelines optimised for UEA high performance computing cluster
Fratjuice
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5
Uncovering the microbes of fraternity basements
Arpeggio
⭐
5
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
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