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6 search results found

Cobrapy ⭐ 414

COBRApy is a package for constraint-based modeling of metabolic networks.

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

Escherconverter ⭐ 14

A standalone program that reads files created with the graphical network editor Escher and converts them to files in community standard formats.

Biosimulators ⭐ 13

Registry of containerized biosimulation tools that support a standard command-line interface

Biosimulators_test_suite ⭐ 7

Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators

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