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12 search results found

🔬 BEDOPS: high-performance genomic feature operations

Foldcomp ⭐ 127

Compressing protein structures effectively with torsion angles

A versatile compressor of third generation sequencing reads.

The specification of the MMTF format for biological structures

Mof Search ⭐ 18

BLAST-like search across all pre-2019 bacteria on ordinary laptop and desktop computers within a few hours

Compression_benchmark ⭐ 18

Benchmarking fastq compression with generic (mature) compression algorithms

High-level API for storing and querying sequence variant data

Fast Bayesian Hidden Markov Model with Wavelet Compression

bgzip support for Rust

bgzf/ciso/daxcr/dictzip/gzinga/migz/razf frontends using zlib/zlib-ng/7-zip/zopfli/libdeflate/miniz/libslz/ backends with parallel (de)compression. compilable with gcc/clang/icc/open64.

Phylogenetic compression of extremely large genome collections [661k ↘𝟏𝟕.𝟓𝐆𝐁, BIGSIdata ↘𝟓𝟐 𝐆𝐁]

Rhdf5filters ⭐ 5

Distributing additional HDF5 compression filters as an R package. Intended to be used with rhdf5, however the compiled filters can also be used with external applications.

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