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goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

Smudgeplot ⭐ 200

Inference of ploidy and heterozygosity structure using whole genome sequencing data

Cgranges ⭐ 144

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

Geoquery ⭐ 73

The bridge between the NCBI Gene Expression Omnibus and Bioconductor

Chanjo provides a better way to analyze coverage data in clinical sequencing.

Seqcover ⭐ 38

seqcover allows user to view coverage for hundreds of genes and dozens of samples

Rna Seq_notes ⭐ 29

A continually expanding collection of RNA-seq tools

Wiggleplotr ⭐ 28

A small R package to make sequencing read coverage plots in R.

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

extract SV signal from a BAM

Pori_graphkb_client ⭐ 6

Front-end web client for the GraphKB project

Lavalampplot ⭐ 6

instructions, python and R code for generating lava lamp plots of kmer coverage

Ancient DNA Read Simulator for Metagenomic

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