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Search results for c plus plus kmer

8 search results found

A compressed, associative, exact, and weighted dictionary for k-mers.

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

Kmtricks ⭐ 60

modular k-mer count matrix and Bloom filter construction for large read collections

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

Metabuli ⭐ 54

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

Bayestyper ⭐ 52

A method for variant graph genotyping based on exact alignment of k-mers

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

sequence element (kmer) enrichment analysis

Fast and compact locality-preserving minimal perfect hashing for k-mer sets.

Classify sequencing reads using MinHash.

A fast and compact k-mer index for large-scale matching and color queries.

Phage-Host Interaction Search Tool

Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)

Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.

Fast and space-efficient taxonomic classification of long reads

Ultrafast sequence typing and gene detection from NGS raw reads

Kmerdecoder ⭐ 9

Extract kmers, skipmers, minimizers.

Kmercamel ⭐ 9

KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.

fast and comprehensive k-mer counting package

Kmer Counter ⭐ 8

Count kmers with a more efficient (faster) hash table

Supersampler ⭐ 6

SuperSampler, an efficient scaled size sketching and sketch comparison tool

Reference-free FASTQ filter for rare germline and somatic variants

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