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97 search results found
Slicer
⭐
1,339
Multi-platform, free open source software for visualization and image computing.
Itk
⭐
1,306
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
Slicergitsvnarchive
⭐
883
Multi-platform, free open source software for visualization and image computing.
Simpleitk
⭐
801
SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.
Ctk
⭐
755
A set of common support code for medical imaging, surgical navigation, and related purposes.
Mitk
⭐
620
The Medical Imaging Interaction Toolkit.
Elastix
⭐
426
Official elastix repository
Curvaturefilter
⭐
261
Curvature Filters are efficient solvers for Variational Models
Evaluatesegmentation
⭐
247
A program to evaluate the quality of image segmentations.
Itksnap
⭐
236
ITK-SNAP medical image segmentation tool
Statismo
⭐
172
Framework for building Statistical Image And Shape Models
Cmake Python Distributions
⭐
103
This project provides a `setup.py` script that build CMake Python wheels.
Starviewer
⭐
103
Starviewer, a cross-platform open source medical imaging software
Sight
⭐
51
Surgical Image Guidance and Healthcare Toolkit
Xreg
⭐
50
Library and executables for modeling and registration applications in medical image analysis. Particular emphasis on intraoperative fluoroscopic (X-ray) navigation via 2D/3D registration.
Itkultrasound
⭐
46
ITK module with classes particularly useful for ultrasound.
Graphmic
⭐
42
Chestimagingplatform
⭐
42
Chest Imaging Platform (CIP)
Itktools
⭐
41
Practical command line tools based on the ITK
Patchbasedinpainting
⭐
41
A patch based image inpainting framework.
Itktubetk
⭐
39
TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.
Nifti2dicom
⭐
39
Convert 3D NIfTI images (and other formats supported by ITK) to DICOM 2D series
Slicercustomapptemplate
⭐
38
Template to be used as a starting point for creating a custom 3D Slicer application
Osparc Iseg
⭐
38
The Medical Image Segmentation Tool Set (iSEG) is a fully integrated segmentation (including pre- and postprocessing) toolbox for the efficient, fast, and flexible generation of anatomical models from various types of imaging data
Interactiveimagegraphcutsegmentation
⭐
36
An ITK/VTK implementation of graph cuts based image segmentation
Imageviewer
⭐
34
A lightweight, cross-platform 2D/3D medical image viewer.
Livervesselness
⭐
34
Repository for Vesselness algorithms
Fw4spl
⭐
29
Main repository for fw4spl
Itkthickness3d
⭐
28
An ITK module to compute 3D thickness
Itkmorphologicalcontourinterpolation
⭐
25
An implementation of morphological contour interpolation
Templatefitting
⭐
25
Template fitting for non-rigid mesh registration of a 3D face scan
Tutorials
⭐
24
Here, we will be showcasing our seminar series “CPP for Image Processing and Machine Learning” including presentations and code examples. There are image processing and machine learning libraries out there which use C++ as a base and have become industry standards (ITK for medical imaging, OpenCV for computer vision and machine learning, Eigen for linear algebra, Shogun for machine learning). The documentation provided with these packages, though extensive, assume a certain level of experience
Caffe_3d_faster_rcnn
⭐
23
Caffe for 3D organ localization in CT image
Itkminimalpathextraction
⭐
21
Vessel and tube centerline extraction
Sliceritkultrasound
⭐
21
Ultrasound image formation, processing, and analysis. Interfaces built off the ITKUltrasound library.
Rttb
⭐
20
Swiss army knife for radiotherapy analysis
Deform
⭐
19
Efficient dense deformable image registration
Qt Itk Vtk Image Viewer
⭐
19
An image viwer comunicating Qt, VTK and ITK
Mirorr
⭐
19
Mirorr: Multimodal Image Registration using blOck-matching and Robust Regression
Itktexturefeatures
⭐
19
Fast, Texture Feature Maps from N-Dimensional Images
Mialsuperresolutiontoolkit
⭐
16
The Medical Image Analysis Laboratory Super-Resolution ToolKit (MIALSRTK) consists of a set of C++ and Python processing and workflow tools necessary to perform motion-robust super-resolution fetal MRI reconstruction in the BIDS Apps framework.
Itkapps
⭐
16
Example Applications based on the Insight Toolkit ITK
Sccan
⭐
16
sparse canonical correlation analysis for neuroimaging
Itk V3d Plugins
⭐
16
Plugins for the V3D application, that provide ITK image segmentation and registration functionalities. Please note that the official repository for this code has now moved to https://svn.janelia.org/penglab/projects/v3d
Itkcolornormalization
⭐
14
Structure preserving color normalization on H&E images using a reference image
Itkgrowcut
⭐
14
ITKGrowCut is a remote module for ITK. It segments a 3D image from user-provided foreground and background seeds.
Qtdcm
⭐
13
QtDcm provides a set of Qt widgets to search and query DICOM images from a PACS. https://qtdcm.github.io
Covalic
⭐
13
A platform for image algorithm validation in public challenges.
Itkvtkglue
⭐
13
This module contains classes that bridge ITK image processing and VTK visualization pipelines.
Scifio Imageio
⭐
13
SCIFIO ImageIO plugin for ITK
Itkisotropicwavelets
⭐
13
External Module for ITK, implementing Isotropic Wavelets and Riesz Filter for multiscale phase analysis.
Mricro
⭐
13
macOS Xcode GLSL Volume Render for NIfTI, Bio-Rad Pic, NRRD, Philips, ITK MetaImage, AFNI, Freesurfer, DICOM images.
3dcurator
⭐
12
A 3D Viewer for CTs of Polychromed Wood Sculptures
Smili
⭐
12
Scientific Visualisation Made Easy
Openatlas
⭐
12
Tools to Support OpenAtlas development
Qgoimagecompare
⭐
11
QGoImageCompare is a library aimed at simple comparison of images. The library provides an easy means to add 2D and 3D image visualization and examination features to a Qt4 application, or the bundled visualization executables can be used on their own.
Contourtosurfaceregistration
⭐
11
Registration between 2D contour and a 3D image based on ITK
Alba
⭐
11
Agile Library for Biomedical Applications
Surface Registration Tool
⭐
11
This software register two surface meshes by iterative closest point method.
Itkstrain
⭐
10
ITK filters to estimate a strain tensor field from a displacement field or a spatial transformation.
Itktotalvariation
⭐
10
External Module for Total Variation Algorithms, providing wrap for https://github.com/albarji/proxTV
Orthogonalplanebasedtools
⭐
10
Cyitk
⭐
10
A simple ITK-to-Python bridge written in Cython
Itk4_topics
⭐
10
Working copy of ITK4 repository for working on topic branches
Itkioscanco
⭐
9
ITK Image IO for Scanco MicroCT .ISQ files
Centerline Extraction Of Coronary Vessels
⭐
9
Phase Congruency Features
⭐
9
C++ implementation of the phase congruency technique for 2D and 3D data
Glia
⭐
9
GLIA: Graph Learning Library for Image Analysis
Lesionsizingtoolkit
⭐
9
A module for the Insight Toolkit (ITK) that provides a generic, modular, and extensible architecture for lesion sizing algorithms in medical images as well as a reference algorithm for lung solid lesion segmentation in CT images.
Midas Journal 769
⭐
9
Random Sample Consensus (RANSAC) Algorithm, A Generic Implementation
Poissonediting
⭐
8
Poisson editing
Dmritool
⭐
8
DMRITool is an open souce toolbox for reconstruction, processing and visualization of diffusion MRI data (DWI, tensor, ODF,EAP, fibers etc.).
Itkanisotropicdiffusionlbr
⭐
8
Smoothing while preserving edges and coherent structures in images with anisotropic diffusion using lattice basis reduction
Imagegraphcutsegmentation
⭐
8
This is a non-interactive version of image graph-cut segmentation with an ITK interface.
Shdr
⭐
7
HDR-MRI Algorithms from "Local contrast-enhanced MR images via high dynamic range processing" published in MRM
Medical Image Tool
⭐
7
Using ITK, VTK, Qt to browse medical images and other functions.
Itkioopenslide
⭐
7
An ITK ImageIO module for the OpenSlide library.
Itk
⭐
7
Fork of ITK for video processing based on ITK from ITK.org.
Structured_prediction_for_segmentation
⭐
7
Image Segmentation using Structured Prediction
Vascusynth
⭐
7
Vascular Tree Synthesis Software. You will need CMake and ITK to run VascuSynth. Read the paper in the Insight Journal for instructions.
Itk
⭐
7
Repository to share codes implemented to run on ITK platform.
Itkmeshtopolydata
⭐
6
Convert an ITK Mesh to a simple data structure compatible with vtk.js PolyData
Itkbonemorphometry
⭐
6
ITK filters that quantify bone morphometry
Simul Atrophy
⭐
6
Atrophy simulation from Inria Asclepios
Medicaltile
⭐
6
A 3D/4D medical image visualization and processing tool.
Mutual_information_cuda
⭐
6
calculate mutual information and mattes mutual information in CUDA
Smoothingrecursiveyvvgaussianfilter
⭐
6
New official repo: https://github.com/InsightSoftwareConsortium/ITKSm
Itkvkfftbackend
⭐
5
VkFFT backends for ITK FFT classes.
Deprecated Ultrasoundspectroscopyrecorder
⭐
5
Diffusionkurtosisfit
⭐
5
Code to reconstruct the Diffusion Kurtosis Tensor from Diffusion Weighted MRI
Tomato
⭐
5
A library to calculate parametric maps in MRI. For details see https://doi.org/10.1016/j.softx.2019.100369
Itkndreg
⭐
5
Caffe_3d_crf_rnn
⭐
5
Caffe with 3D CRF-RNN for medical image analysis
Ptxtools
⭐
5
Read a PTX file into an ITK image
Itkgraphcutsegmentation
⭐
5
An ITK implementation of the GraphCut framework. See 'Graph cuts and efficient ND image segmentation' by Boykov and Funka-Lea and 'Interactive graph cuts for optimal boundary & region segmentation of objects in ND images' by Boykov and Jolly.
Itkarrayfire
⭐
5
ArrayFire-backed ITK pipelines
Deformationfieldtransform
⭐
5
An ITK-based C++ app that deforms an input 3D volume according to an input deformation field.
Meshtolabelmap
⭐
5
Itkdicom
⭐
5
Better support for DICOM in ITK.
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