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Search results for c plus plus genome

223 search results found

Metagenomic classifier for CUDA-enabled GPUs

Python wrappers for a fork of progressiveMauve multiple genome aligner

K2Mem is a variant of Kraken 2 taxonomic sequence classification system that can learn from the previous classifications.

Multi Genome Reference ⭐ 6

A program to generate a graph which presents a simplified representation of several full length genomes

Genome Browser ⭐ 6

Genome browser to visualize and analyze genomic data

Sorting Intolerant From Tolerant For Genomes

Gametebinning ⭐ 5

GAEseq: A Graph Auto-Encoder for Haplotype Assembly and Viral Quasispecies Reconstruction

Clonalorigin ⭐ 5

Inference of homologous recombination in bacteria using whole genome sequences

Kraken Linked ⭐ 5

Fast realistic ChIP-seq simulator

Chromatin Accessibility Annotation Tool

Acceleration of long read-based structure variation calling by chimeric read filtering

Eliminating Assembly Gaps by Long read Extension

Ideas_2018 ⭐ 5

Jointly characterizing epigenetic dynamics across multiple cell types

Ngshmmalign ⭐ 5

ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and HCV) that experience substantial biological insertions and deletions

An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome

Reference-free FASTQ filter for rare germline and somatic variants

Optimal Seed Solver ⭐ 5

Optimal Seed Solver (OSS) is a dynamic-programming algorithm that finds the optimal seeds of a read, which renders the minimum total seed frequency. It is described by Xin et al. at http://arxiv.org/pdf/1506.08235v1.pdf.

Tool for genome-wide association analysis of imputed genetic data.

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