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Search results for bloom filter kmer

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In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more

Kmtricks ⭐ 60

modular k-mer count matrix and Bloom filter construction for large read collections

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

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