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Strelka ⭐ 204

Strelka2 germline and somatic small variant caller

ClairS - a deep-learning method for long-read somatic small variant calling

Seqarray ⭐ 41

Data management of large-scale whole-genome sequence variant calls (Development version only)

Clairs To ⭐ 18

ClairS-TO - a deep-learning method for tumor-only somatic SNV calling

A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.

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