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21 search results found

Serratus ⭐ 219

Ultra-deep search for novel viruses

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

Datasets Sars Cov 2 ⭐ 38

Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)

SARS-CoV-2 workflow for nanopore sequence data

Reference-based consensus creation

Ena Cog Uk Wfs ⭐ 21

Collection of scripts for automated SARS-CoV-2 genome surveillance.

Sars Cov 2 Processing Requests ⭐ 17

Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.

Pigx_sars Cov 2 ⭐ 16

PiGx SARS-CoV-2 wastewater sequencing pipeline

Covigator Ngs Pipeline ⭐ 15

A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.

Sars Cov 2_b.1.1.529_spike Rbd_predictions ⭐ 14

AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions

Covigator ⭐ 11

CoVigator - Monitoring SARS-CoV-2 mutations

Voc Identify ⭐ 7

Identify Variants of Concern from metagenomic samples of SARS-CoV-2

Procedure used fro the surveillance of SARS-CoV-2 genomic variants in wastewater.

A database-driven system for handling genomic sequences of SARS-CoV-2 and screening genomic profiles.

CoV-Seq: COVID-19 Genomic Sequence Database and Visualization

Intro_python_ismb2022 ⭐ 6

Covid Bioinformatics ⭐ 5

Software tools to collect Coronavirus sequences and create protein and nucleotide HMMs

Freeform Virus Blinky ⭐ 5

Freeform electronics sculpture of a SARS-CoV-2 virus that blinks it's own RNA sequence.

Covid Mvp ⭐ 5

COVID-MVP is an interactive heatmap based visualization tool for SARS-CoV-2. It tracks mutations along with their functional impact and prevalence in Variants of Concern and Interest in near-real time. COVID-MVP is developed in collaboration with nf-ncov-voc https://github.com/cidgoh/nf-ncov-voc as back-end genomics workflow.

Nf Ncov Voc ⭐ 5

A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.

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