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15 search results found

Rapid comparison and dereplication of genomes

Ppanggolin ⭐ 191

Build a partitioned pangenome graph from microbial genomes

Pygenomeviz ⭐ 177

A genome visualization python package for comparative genomics

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

Referenceseeker ⭐ 85

Rapid determination of appropriate reference genomes.

Rdptools ⭐ 36

Collection of commonly used RDP Tools for easy building

Bac Genomics Scripts ⭐ 28

Collection of scripts for bacterial genomics

Ghost Tree ⭐ 23

creating hybrid-gene phylogenetic trees for diversity analyses

Phantasm ⭐ 20

PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes

Idbacapp ⭐ 20

A MALDI Mass Spectrometry Bioinformatics Platform

Microbiomer ⭐ 17

A comprehensive R package for microbiome analysis.

A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.

Hamroaster ⭐ 15

hAMRoaster is an analysis pipeline that can compare the output of nine different tools for detecting AMR genes and provide metrics of their performance

A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima

MGKit: Metagenomics Framework

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