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metabolomics
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20 search results found
Sirius
⭐
66
SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
Sirius Libs
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45
sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java
Metaspace
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39
Cloud engine and platform for metabolite annotation for imaging mass spectrometry
Chemrich
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19
Chemical Similarity Enrichment analysis of metabolomics datasets
Omicssuite.github.io
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15
OmicsSuite website for releasing new version.
Buddy_metabolomics
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12
Molecular formula discovery via bottom-up MS/MS interrogation
Chromatographr
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11
Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).
Pomashiny
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11
🍎 Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
Msbuddy
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11
a python package for molecular formula analysis in MS-based small molecule studies
Mbpls
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10
(Multiblock) Partial Least Squares Regression for Python
Pymultiomics
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9
Python toolbox for multi-omics data mapping and analysis
Npdtools
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8
Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry data
Workflow4metabolomics
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8
Workflow4Metabolomics meta repository
Fiora
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7
Fiora is an in silico fragmentation algorithm for small compounds and produces simulated tandem mass spectra (MS/MS). The framework uses a graph neural network as the core module and edge prediction to identify likely bond cleavages and fragment ion intensities.
Mwtab
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7
The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) experimental data.
Cyclobranch
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7
A tool for mass spectrometry data analysis.
Py Sspa
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7
Single sample pathway analysis tools for omics data
Metamapp
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7
R codes for creating metamapp graphs and files
Metabridge_shiny
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6
🕸 Network-based multi-omic integration of metabolomics data.
Sm Engine
⭐
6
Engine for metabolite annotation for imaging mass spectrometry
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