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Search results for bioinformatics genetics
bioinformatics
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genetics
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52 search results found
Hail
⭐
905
Cloud-native genomic dataframes and batch computing
Cellrank
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279
CellRank: dynamics from multi-view single-cell data
Intermine
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228
A powerful open source data warehouse system
Gwa_tutorial
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184
A comprehensive tutorial about GWAS and PRS
Graphtyper
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156
Population-scale genotyping using pangenome graphs
Lineage
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114
tools for genetic genealogy and the analysis of consumer DNA test results
Molgenis
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106
MOLGENIS - for scientific data: management, exploration, integration and analysis.
Verifybamid
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78
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
Geneticsmakie.jl
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66
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
Xpclr
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64
Code to compute the XP-CLR statistic to infer natural selection
Awesome Genetics
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62
A curated list of awesome bioinformatics software.
Awesome Structural Bioinformatics
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54
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
Genotify
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51
A minimal desktop app for easy and convenient gene annotation.
Tomahawk
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39
Fast calculations of linkage-disequilibrium in large-scale human cohorts
Dee2
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37
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
Gor
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37
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
Locuszoom Standalone
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30
Create regional association plots from GWAS or meta-analysis
Orthoevolution
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28
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
Genipe
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26
Genome-wide imputation pipeline
Autopvs1
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23
An automatic classification tool for PVS1 interpretation of null variants
Iliad
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21
ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications
Genomeanalysismodule
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21
Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.
Msabrowser
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21
🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
Tachyon
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17
High-level API for storing and querying sequence variant data
Codex
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17
A minimal genetic data explorer that processes all genetic information locally.
Codonadaptationindex
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17
Python Implementation of Codon Adaption Index
Manhattan_generator
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15
Manhattan plot Generator
Goldenrecord
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15
one aesthetic way to store musical notes into nucleic acid sequence
Synopsys Project 2017
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14
A deep learning based bioinformatics project on epigenetics in Type 2 Diabetes.
Pyplink
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14
Python module to read binary Plink files.
Gslcore
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13
Core library and basic plug-ins for the Amyris Genotype Specification Language (GSL) compiler.
Hlabud
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13
🐶 hlabud: HLA genotype analysis in R
Kgp
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12
1000 Genomes Project Metadata R Package
Terapca
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12
TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA features no dependencies to external libraries and combines the robustness of subspace iteration with the power of randomization.
Seave
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12
Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. Seave is open source and deployable locally, or on a cloud computing provider, and works readily with gene panel, exome and whole genome data, scaling fr
Region Plot
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12
A tool to plot significant regions of GWAS
Libflagstats
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11
Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
Tostadas
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10
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Algebra
⭐
10
A Boolean Algebra for Genetic Variants
Positive Selection
⭐
10
Scripts and procedures for detecting positively selected genes and codons in primates
Sequence Database Curator
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10
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
Accusyn
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9
AccuSyn: An Accurate Web-based Genome Synteny Browser
Variantconvert
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9
A customizable genetic variants file format converter.
Allelefrequencies
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9
📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.
Variantcallformat.jl
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8
Read and write VCF and BCF files
Biotech Resources
⭐
8
Resources for learning Biotechnology, Biology, Synthetic Biology, Genomic and Bioinformatic
Vcfppr
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6
Rapid processing of VCF/BCF files in R!
Vase
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5
Variant Annotation, Segregation and Exclusion for family or cohort based rare-disease sequencing studies.
Wikigenomesbase
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5
A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.
Rdna Nexus
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5
Functions to analyse UK Biobank genetic data directly from DNA Nexus' RStudio Workbench
Gslc
⭐
5
Genotype Specification Language command-line compiler application.
Genetic Mapper
⭐
5
SVG Genetic Map Drawer
Recimap
⭐
5
Recimap (a reciprocal mapping tool) was developed as a bioinformatics command-line tool/pipeline to find rearrangements breakpoints between two closely related genomes.
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