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bioconductor
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bioinformatics
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34 search results found
Dada2
⭐
428
Accurate sample inference from amplicon data with single nucleotide resolution
Karyoploter
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278
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
Splatter
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195
Simple simulation of single-cell RNA sequencing data
Bioc Refcard
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170
Bioconductor cheat sheet
Msnbase
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115
Base Classes and Functions for Mass Spectrometry and Proteomics
Rblast
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91
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
Genomicdatacommons
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80
Provide R access to the NCI Genomic Data Commons portal.
Geoquery
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73
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
Cmapr
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56
Tools for manipulating annotated data matrices
Wdlrunr
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34
Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
Orthogene
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31
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
Rcpi
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28
Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.
Tidysq
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28
tidy processing of biological sequences in R
Biomart
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27
R package providing query functionality to BioMart instances like Ensembl
Sevenbridges R
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27
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
Circtools
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22
circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
Risa
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17
Risa allows to access metadata/data in ISA-tab format and builds Bioconductor data structures. Apart from parsing ISA-tab files, the package also provides functionality to save the ISA-tab dataset, or each of its individual files. Additionally, it is also possible to update assay files. Currently, metadata associated to proteomics and metabolomics-based assays (i.e. mass spectrometry) can be processed into an xcmsSet object (from the xcms R package).
Normalyzerde
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14
Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
Artms
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13
Analytical R Tools for Mass Spectrometry
Signer
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12
Cogena
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12
co-expressed gene-set enrichment analysis
Proloc
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11
A unifying bioinformatics framework for organelle proteomics
Piano
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11
piano - An R/Bioconductor package for gene set analysis
Guidock
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11
Graphical GUI for Docker (Bioconductor, R, Cytoscape, NetworkBMA)
Isoformic
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10
Isoform-level functional RNA-Seq analysis
Poma
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8
📦 Tools for Omics Data Analysis
Genextender
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8
R/Bioconductor package for optimized functional annotation of ChIP-seq data
Karyoploter_tutorial
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8
Examples on how to use the karyoploteR R/Bioconductor package
Npa
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6
Network Perturbation Amplitude
Dockflow
⭐
6
Containerize Bioconductor Workflows
Copynumberplots
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6
R package to create plots representing copy number data using karyoploteR
Rhdf5lib
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6
Distribution of the HDF5 library in an R package
Rcas
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5
R package for the RNA Centric Annotation System (RCAS)
Ctrap
⭐
5
Identification of candidate causal perturbations from differential gene expression data
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1-34 of 34 search results
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