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16 search results found

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

Circosjs ⭐ 454

d3 library to build circular graphs

Arvados ⭐ 354

An open source platform for managing and analyzing biomedical big data

Bigsnpr ⭐ 168

R package for the analysis of massive SNP arrays.

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

The repository for the Machine Learning and Big Data with kdb+/q book by Novotny et al.

Mmtf Workshop 2018 ⭐ 53

Structural Bioinformatics Training Workshop & Hackathon 2018

Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop

Javascript full-stack framework for Big Data visualisation and analysis

Workflux ⭐ 30

An open-source, cloud-ready web application for simplified deployment of big data workflows.

Lifelike ⭐ 18

Turning big data into contextualized knowledge. Lifelike is a modern application platform for data extraction, analysis and visualization.

GMQL - GenoMetric Query Language

WebGL Heatmap Viewer for Big Data and Bioinformatics

Spark Genome Alignment Demo ⭐ 13

An example of bioinformatics and bigdata tools can playing nicely together

TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA features no dependencies to external libraries and combines the robustness of subspace iteration with the power of randomization.

Python Library for data analysis based on GMQL

Coursera Bioinformatics ⭐ 9

My solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; Molecular Evolution; Genomic Data Science and Clustering; Finding Mutations in DNA and Proteins; Bioinformatics Capstone: Big Data in Biology)

Epigraphdb ⭐ 6

Examples on using EpiGraphDB

Genespark ⭐ 5

geneSpark is a bioinformatics software program written in Python and Apache Spark for big data epigenetic histone modification ChIP-seq analysis.

Efficient Variant Analysis

Genomic Bigdata Spark ⭐ 5

Genomic BigData Warehousing with Apache Spark and LakeHouse Architecture

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