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11 search results found

🔬 BEDOPS: high-performance genomic feature operations

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

A DNA Sequence Alignment/Map (SAM) library for Clojure

Performs memory-efficient reservoir sampling on very large input files delimited by newlines

Bamtocov ⭐ 43

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊

Frequently used commands in bioinformatics

Covtobed ⭐ 36

⛰ covtobed | Convert the coverage track from a BAM file into a BED file

A python package and a set of shell commands to handle GTF files

Bioinf Commons ⭐ 30

Bioinformatics library in Kotlin

High Perf Bio ⭐ 9

Open-source toolkit that simplifies and speeds up work with bioinformatics data. high-perf-bio allows you easily upload VCF, BED or arbitrary tables to DB and execute popular bioinformatic queries without MongoDB Query Language knowledge.

BED-to-GFF3 converter that runs in parallel

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