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Search results for bioinformatics assembler
assembler
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bioinformatics
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17 search results found
Megahit
⭐
442
Ultra-fast and memory-efficient (meta-)genome assembler
Abyss
⭐
276
🔬 Assemble large genomes using short reads
Masurca
⭐
207
Soapdenovo2
⭐
197
Next generation sequencing reads de novo assembler.
Miniasm
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195
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
Indra
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154
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
Plass
⭐
99
Protein-Level ASSembler (PLASS): sensitive and precise protein assembler
Bio
⭐
97
Bioinformatics library for .NET
Arcs
⭐
86
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
Fermi
⭐
68
A WGS de novo assembler based on the FMD-index for large genomes
Iva
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37
de novo virus assembler of Illumina paired reads
Soapdenovo Trans
⭐
27
SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.
Pandoras Toolbox For Bioinformatics
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26
A collection of well-known bioinformatics programs.
Mapping Iterative Assembler
⭐
15
Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria
Modular Assembly Hs18
⭐
9
Mix and match modular genome assembler components
Kermit
⭐
6
guided genome assembler using colored overlap graphs
Kit4b
⭐
5
A fully integrated K-mer Informed Toolkit for Bioinformatics
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1-17 of 17 search results
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