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Search results for bindings protein
bindings
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protein
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P2rank
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193
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
Prodigy
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76
Predict the binding affinity of protein-protein complexes from structural data
Deepdrug3d
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46
A convolutional neural network for classifying binding pockets based on spatial and chemical information extracted from the pockets.
Pylipid
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37
A python toolkit for analysing membrane protein-lipid interactions.
Dlscore
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31
DLSCORE: A deep learning based scoring function for predicting protein-ligand binding affinity
Hotspots
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27
A knowledge-based method for determining small molecule binding "hotspots".
Monn
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26
MONN: a Multi-Objective Neural Network for Predicting Pairwise Non-Covalent Interactions and Binding Affinities between Compounds and Proteins
Onionnet
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24
A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction
Deepsurf
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24
A surface-based deep learning approach for the prediction of ligand binding sites on proteins
Ideep
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23
iDeep: integrated prediction of RNA-protein binding sites using deep learning
Cryptosite
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19
Library for prediction of cryptic binding sites
Paccmann_proteomics
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19
PaccMann models for protein language modeling
Protocaller
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18
Full automation of relative protein-ligand binding free energy calculations in GROMACS
Pybindingcurve
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14
Binding curve simulation and experimental data fitting for multi component protein-ligand systems
Bindpredict
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14
Prediction of binding residues for metal ions, nucleic acids, and small molecules.
P2rank Datasets
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14
Datasets for P2Rank project. https://github.com/rdk/p2rank
Bitenet
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12
Spatiotemporal identification of druggable binding sites using deep learning
Deepcseqsite
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12
Protein-ligand binding sites prediction toolkits
Rfscorevs_binary
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12
RF-Score-VS binary
Neurobind
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11
Yet Another Model Using Neural Networks for Predicting Binding Preferences of for Test DNA Sequences
Deep Learning Mhci
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10
For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
Gromacs
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9
gromacs(Protein-Ligand Complex)
Proteindescriptor
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8
a protein descriptor for site prediction
Abchemoinformatics
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7
🆎 ABC of chemoinformatics
Cdeepbind
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7
cDeepbind: A context sensitive deep learning model of RNA-protein binding
Transite
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7
RNA-binding protein motif analysis
Chexmix
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7
ChExMix: the ChIP-exo mixture model
Combs
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6
Convergent motifs for binding sites
Pyemma_ipython
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6
PyEMMA Jupyter Notebooks
Deepripe
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6
Dlprb
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6
DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding
Bindkin
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6
A structural benchmark to measure point mutations’ impact on kinase-ligand interactions
Bearlyunderstanding
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6
ML based prediction of immunogenic neoantigens for immunotherapy
Pointsite
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5
PointSite: a point cloud segmentation tool for identification of protein ligand binding atoms
Hypertribe
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5
Software for updated version of TRIBE
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