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9 search results found

P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.

Genomicsqlite ⭐ 146

Genomics Extension for SQLite

Cython bindings and Python interface to HMMER3.

Awesome Molecular Docking ⭐ 81

We would like to maintain a list of resources which aim to solve molecular docking and other closely related tasks.

Predict the binding affinity of protein-protein complexes from structural data

FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)

Pymsfilereader ⭐ 45

Thermo MSFileReader Python bindings

Biocircos.r ⭐ 26

Htmlwidgets binding R commands to the BioCircos.js library

Python bindings to UCSC BigWig and BigBed library

Codon Usage Tables ⭐ 21

📊 Codon usage tables in code-friendly format + Python bindings

Pytaxonkit ⭐ 17

Python bindings for the TaxonKit library

Bindpredict ⭐ 14

Prediction of binding residues for metal ions, nucleic acids, and small molecules.

A robust model for quantitative comparison of ChIP-Seq data sets.

Neurobind ⭐ 11

Yet Another Model Using Neural Networks for Predicting Binding Preferences of for Test DNA Sequences

DNA/RNA folding in Nim

RNA-binding protein motif analysis

D bindings and OOP wrappers for htslib

P2rank Framework ⭐ 6

The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc.

Bioinformatic approach to identify functional transcription factor binding motifs

Rust_sbml ⭐ 6

SBML parser + bindings to python

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