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Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.

Orbit ⭐ 1,776

A Python package for Bayesian forecasting with object-oriented design and probabilistic models under the hood.

Bda_py_demos ⭐ 851

Bayesian Data Analysis demos for Python

Example Models ⭐ 745

Example models for Stan

Tidybayes ⭐ 689

Bayesian analysis + tidy data + geoms (R package)

Statistical Rethinking With Python And Pymc3 ⭐ 674

Python/PyMC3 port of the examples in " Statistical Rethinking A Bayesian Course with Examples in R and Stan" by Richard McElreath

Bda_r_demos ⭐ 538

Bayesian Data Analysis demos for R

Rainier ⭐ 418

Bayesian inference in Scala.

Bayesplot ⭐ 402

bayesplot R package for plotting Bayesian models

Rstanarm ⭐ 371

rstanarm R package for Bayesian applied regression modeling

Bayesian Statistics ⭐ 310

This repository holds slides and code for a full Bayesian statistics graduate course.

Shinystan ⭐ 181

shinystan R package and ShinyStan GUI

Posteriordb ⭐ 154

Database with posteriors of interest for Bayesian inference

Miscellaneous R Code ⭐ 140

Code that might be useful to others for learning/demonstration purposes, specifically along the lines of modeling and various algorithms. Now almost entirely superseded by the models-by-example repo.

loo R package for approximate leave-one-out cross-validation (LOO-CV) and Pareto smoothed importance sampling (PSIS)

Cmdstanr ⭐ 126

CmdStanR: the R interface to CmdStan

Diffeqbayes.jl ⭐ 119

Extension functionality which uses Stan.jl, DynamicHMC.jl, and Turing.jl to estimate the parameters to differential equations and perform Bayesian probabilistic scientific machine learning

Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference

Projpred ⭐ 106

Projection predictive variable selection

An R package for Bayesian structural equation modeling

Gsoc17 Hhmm ⭐ 73

Bayesian Hierarchical Hidden Markov Models applied to financial time series, a research replication project for Google Summer of Code 2017.

Bayescog_wien ⭐ 70

Teaching materials for BayesCog at Faculty of Psychology, University of Vienna

Dbda2estan ⭐ 63

Stan implementations of models in Doing Bayesian Data Analysis, 2nd Edition

Bayesian Basics ⭐ 61

🚫 ↩️ A document that introduces Bayesian data analysis.

Stan Mode ⭐ 60

Emacs mode for Stan.

Matlabstan ⭐ 54

Matlab interface to Stan, a package for Bayesian inference

Bayes Workflow Book ⭐ 51

Source files for the book "Bayesian Workflow Using Stan"

Idealstan ⭐ 50

idealstan offers item-response theory (IRT) ideal-point estimation for binary, ordinal, counts and continuous responses with time-varying and missing-data inference. Latent space model also included. Full and approximate Bayesian sampling with 'Stan' (www.mc-stan.org).

Bayes Vis Paper ⭐ 49

'Visualization in Bayesian workflow' by Gabry, Simpson, Vehtari, Betancourt, and Gelman. (JRSS discussion paper and code)

Stan_workshop_2016 ⭐ 49

Bayesian Modeling using Stan in R (May/June 2016)

Bayesian spatial analysis

Applied time series analysis in R with Stan. Allows fast Bayesian fitting of multivariate time-series models.

Priorsense ⭐ 44

priorsense: an R package for prior diagnostics and sensitivity

Glmmfields ⭐ 44

R package for Bayesian spatial and spatiotemporal GLMMs with possible extremes

R package for Bayesian meta-analysis models, using Stan

Stantargets ⭐ 42

Reproducible Bayesian data analysis pipelines with targets and cmdstanr

Bda_m_demos ⭐ 42

Bayesian Data Analysis demos for Matlab/Octave

Bayesian ⭐ 41

Bindings for Bayesian TidyModels

Bayesian Generalized Linear Models with Time-Varying Coefficients

Learn Stan ⭐ 37

A practical introduction to modeling in Stan

Httpstan ⭐ 35

HTTP interface to Stan, a package for Bayesian inference.

Noisy Networks Measurements ⭐ 35

Noisy network measurement with stan

Today I Learned

Fit models to data from unmarked animals using Stan. Uses a similar interface to the R package 'unmarked', while providing the advantages of Bayesian inference and allowing estimation of random effects.

Stan4bart ⭐ 32

Uses Stan sampler and math library to semiparametrically fit linear and multilevel models with additive Bayesian Additive Regression Tree (BART) components.

Cmdstan.jl ⭐ 32

CmdStan.jl v6 provides an alternative, older Julia wrapper to Stan's `cmdstan` executable. CmdStan will be deprecated in 2022.

Bridgesampling ⭐ 30

R package for bridge sampling

Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis

Bayeshmm ⭐ 26

Full Bayesian Inference for Hidden Markov Models

Covidestim ⭐ 25

Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States

Bayesdfa ⭐ 25

Bayesian DFA with Stan

Scikit Stan ⭐ 24

A high-level Bayesian analysis API written in Python

Embracinguncertainty ⭐ 24

Material for AMLD 2020 workshop "Bayesian Inference: embracing uncertainty"

Covidseir ⭐ 22

Bayesian SEIR model to estimate the effects of social-distancing on COVID-19

Mcmcdiagnostics.jl ⭐ 22

Markov Chain Monte Carlo convergence diagnostics in Julia

Bayes Course ⭐ 22

An introduction to Bayesian data analysis with Stan (a work in progress)

Turingbnpbenchmarks ⭐ 22

Benchmarks of Bayesian Nonparametric models in Turing and other PPLs

Diff Means Half Dozen Ways ⭐ 21

Run standard t-tests, simulations, and Bayesian difference in means tests with R and Stan

Hierarchical Bayesian Modeling of English Premier League

R package to fit statistical models to repeated categorical rating data using Stan

BayesVL package for Bayesian statistical analyses in R

Teaching Stan Hierarchical Modelling ⭐ 15

Jupyter notebooks for teaching hierarchical Bayesian modelling with Stan

Bayesian Intro ⭐ 15

Introduction to Bayesian statistics

Stan Survival Shrinkage ⭐ 14

Bayesian linear survival analysis with shrinkage priors in Stan

Bayesreg ⭐ 14

R package to perform Bayesian regularization using Stan.

Bayes4psy ⭐ 14

A library intended to simplify use of Bayesian statistics in psychology.

Bayesian System IDentification

Probabilistic_programming ⭐ 13

Useful Resources ⭐ 13

A place to keep the things I've stumbled upon

Bdaecology ⭐ 13

Bayesian Data Analysis in Ecology with R, BUGS, and Stan

Gradmcmc ⭐ 12

Faster estimation of Bayesian models in ecology using Hamiltonian Monte Carlo

Targets Stan ⭐ 11

An example project to validate a Stan model in a targets pipeline

Scr Stan ⭐ 11

Spatial capture-recapture models in Stan

Stan Workshop ⭐ 11

Examples of working and non-working models, initially for ODCS 2016 in Boston.

Bayes Multilevel Tutorial ⭐ 11

A tutorial on Bayesian multilevel modeling using R and Stan.

Bayesian models of football leagues

Ny_r_talk ⭐ 10

Slides and Code for NY R Users Meetup on January 9, 2020, "A Common Model, Separated by Two Disciplines: Bayesian Factorization Machines with Stan and R" presented by Adam Lauretig

Bayesian calibration of Building Energy Models using Stan modeling language

Bayesian tools for reconstructing past demography

Statistical Rethinking Notes ⭐ 9

Probablytensorflow ⭐ 9

A tutorial on Bayesian Inference with Tensorflow Probability

Shot Generation ⭐ 8

Bayesian modelling of shot generation and conversion in soccer

Stancon2020 ⭐ 8

Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"

Complex Coinfection Inference ⭐ 8

Bayesian inference of effective contagion models from population level data, with STAN

Bayesian Statistics Project ⭐ 7

Project for the Bayesian Statistics exam at University of Trieste

Bayesian Meta-Analysis via 'Stan'

Lander Stan Class 2023 ⭐ 7

Materials for Bayes/Stan workshop using CmdStanR

Stat_comp_benchmarks ⭐ 7

Benchmark Models for Evaluating Algorithm Accuracy

Multivariate Bayesian Structural Time Series in Stan

Shinybrms ⭐ 7

An R package providing a GUI ('shiny' app) for the R package 'brms'.

R package for the Bayesian estimation of diagnostic classification models using Stan

Berlin Bayesians Hands On ⭐ 6

Data and resources for the Berlin Bayesians Hands On Session

Bayesynergy ⭐ 6

An R package for Bayesian semi-parametric modelling of in-vitro drug combination experiments

Stan Book ⭐ 6

Repository for book "Bayesian Statistics Using Stan", text files in Rmarkdown, plus example data, Stan models, and scripts

Baker Bayesian Analysis In Docker ⭐ 6

Baker Project: Dockerfile for Bayesian Analysis

Rescue Time Estimation ⭐ 6

Bayesian estimation of a typical week with RescueTime

bpcs - Bayesian Paired Comparison in Stan

Saa_2019_bayes_car ⭐ 5

Repo for code and documentation for 2019 SAA meeting paper entitled: Estimating the Effect of Endogenous Spatial Dependency with a Hierarchical Bayesian ICAR Model on Archaeological Site Location Data

convenient python functions for bayesian GLMs (using Stan / PyStan)

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