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Search results for assembly nextflow

15 search results found

Assembly and binning of metagenomes

Viralrecon ⭐ 101

Assembly and intrahost/low-frequency variant calling for viral samples

Emg Viral Pipeline ⭐ 98

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis

Funcscan ⭐ 49

(Meta-)genome screening for functional and natural product gene sequences

Simple bacterial assembly and annotation pipeline

Nanoflow ⭐ 20

🔬 De novo assembly of nanopore reads using nextflow

Bactpipe ⭐ 17

BACTpipe: An assembly and annotation pipeline for bacterial genomics

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

Genomeannotator ⭐ 11

Pipeline for the identification of (coding) gene structures in draft genomes.

Assembly and intrahost / low-frequency variant calling for viral samples

Polishclr ⭐ 10

A nextflow pipeline for polishing CLR assemblies

Mikrokondo ⭐ 6

A simple pipeline for bacterial assembly and quality control

Mgnify Lr ⭐ 5

Evaluation of long-read support for the MGnify pipeline

Reads2resistome ⭐ 5

Hybrid and non-hybrid whole genome assembler with resistome identification for Illumina, PacBio and Nanopore reads.

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