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Search results for assembly conda

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Genome Assembly and Annotation Service code

Ltr_retriever ⭐ 167

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

Plasflow ⭐ 61

Software for prediction of plasmid sequences in metagenomic assemblies

Interactive visualization of assembly graphs

SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articl

Stringdecomposer ⭐ 22

Tool for decomposition centromeric assemblies and long reads into monomers

Mapping-Assisted Targeted-Assembly for Metagenomics

Bactpipe ⭐ 17

BACTpipe: An assembly and annotation pipeline for bacterial genomics

A pipeline for bioinformatics analysis of bacterial genomes

Mitochondrial Genome Assembly

Haploconduct ⭐ 11

Haplotype-aware genome assembly toolkit

Snakemake_anvio ⭐ 8

snakemake rules for running anvio

ZGA prokaryotic genome assembly and annotation pipeline

pipeline for using ribosomal flanking regions to improve bacterial genome assembly

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