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Search results for 3d slicer extension

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64 search results found

Monailabel ⭐ 496

MONAI Label is an intelligent open source image labeling and learning tool.

dcmqi (DICOM for Quantitative Imaging) is a free, open source C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results

Slicerjupyter ⭐ 179

Extension for 3D Slicer that allows the application to be used from Jupyter notebook

Slicervirtualreality ⭐ 101

A Slicer extension that enables user to interact with a Slicer scene using virtual reality.

Slicerheart ⭐ 89

3D Slicer extension for cardiac analysis

Slicerigt ⭐ 80

Modules supporting image-guided interventions in 3D Slicer.

Slicermorph ⭐ 74

Extension to import microCT data and conduct 3D morphometrics in Slicer

Slicerdmri ⭐ 65

Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.

Slicerautomateddentaltools ⭐ 57

A 3D Slicer extension to use AMASSS, ALI-CBCT and ALI-IOS

Slicerlungctanalyzer ⭐ 57

This is a 3D Slicer extension for segmentation and spatial reconstruction of infiltrated, collapsed, and emphysematous areas in lung CT.

Extensionsindex ⭐ 52

Slicer extensions index

Slicerelastix ⭐ 34

This extension makes available Elastix medical image registration toolkit (http://elastix.isi.uu.nl/) available in Slicer.

Spharm Pdm ⭐ 34

Shape analysis has become of increasing interest to the medical community due to its potential to precisely locate morphological changes between healthy and pathological structures. SPHARM-PDM is a tool that computes point-based models using a parametric boundary description for the computing of Shape analysis.

Slicertomosam ⭐ 30

An extension of 3D Slicer using the Segment Anything Model (SAM) to aid the segmentation of 3D data from tomography or other imaging techniques.

Slicersegmenteditorextraeffects ⭐ 24

Many additional segmentation tools for 3D Slicer's Segment Editor

Slicerrvxliversegmentation ⭐ 24

3D Slicer plugin for Liver Anatomy Annotation by R-Vessel-X

Slicerpytorch ⭐ 23

This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.

Ukftractography ⭐ 21

Sliceritkultrasound ⭐ 21

Ultrasound image formation, processing, and analysis. Interfaces built off the ITKUltrasound library.

Slicerdentalmodelseg ⭐ 21

This extension aims to provide a GUI for a deep-learning automated teeth segmentation tool that we developed at the University of North Carolina in Chapel Hill.

Slicer Surfacewrapsolidify ⭐ 19

3D Slicer extension which contains a Segment Editor Effect that solidifies and extracts the surface of a segmentation

Slicertorchio ⭐ 19

3D Slicer module for TorchIO.

Slicerbonereconstructionplanner ⭐ 18

3D Slicer module for planning mandible reconstruction surgery using fibula flap

Segmentationreview ⭐ 18

Slicer3D extension for rating using Likert-type score Deep-learning generated segmentations, with segment editor funtionality. Created to speed up the validation process done by a clinician - the dataset loads in one batch with no need to load masks and volumes separately.

Slicermonaiviz ⭐ 16

MONAIViz - 3D Slicer Extension

Slicer Petdicomextension ⭐ 14

3D Slicer extension containing tools for importing DICOM PET series

Tciabrowser ⭐ 14

3D Slicer module for browsing and downloading medical imaging collections from The Cancer Imaging Archive (TCIA).

Collageradiomics ⭐ 14

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.

Slicernetstim ⭐ 13

Collection of 3D Slicer modules mainly focused on deep brain stimulation applications.

Slicerfreesurfer ⭐ 12

This repository contains the SlicerFreeSurferImporter extension for 3D Slicer. The extension implements a module for importing models, scalar overlays, and segmentations from FreeSurfer, as well as handling the transformation of models from FreeSurfer to Slicer coordinates.

Slicer Liver ⭐ 12

3D Slicer extension for liver analysis and therapy planning

Sliceropenanatomy ⭐ 12

3D Slicer extension for exporting Slicer scenes to use in the OpenAnatomy.org browser

Slicerigsio ⭐ 11

Utility extension for 3D Slicer, containing tools and algorithms for building image guided surgery applications

DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation

Sliceropencv ⭐ 11

Slicer Extension wrapping OpenCV

Mpreview ⭐ 10

3D Slicer extension for streamlined annotation of images

Slicerneurosegmentation ⭐ 10

NeuroSegmentation extension for 3D Slicer

Slicerdebuggingtools ⭐ 9

Extension for 3D Slicer containing various tools for module development and debugging

Slicetracker ⭐ 9

SliceTracker is a 3D Slicer extension to support the workflow of MR-guided prostate biopsies.

Pettumorsegmentation ⭐ 9

3D Slicer Extension for PETTumorSegmentation

Slicer extension for ultrasound-guided breast tumor resection (lumpectomy)

Slicercaseiterator ⭐ 8

Simple Scripted Module to batch process patients in 3D Slicer

Slicer Abltemporalbonesegmentation ⭐ 8

3D Slicer extension featuring spacing resampling, fiducial registration, and rigid registration of temporal bone images.

Cranio-Maxillofacial registration

Slicerastmphantomtest ⭐ 7

This software is a module for 3D Slicer to perform the accuracy test of a tracking system as described in the ASTM standard F2554.

Segmentregistration ⭐ 7

3D Slicer extension for segment registration (aka fusion, contour propagation)

Bonetextureextension ⭐ 7

Slicer extensions for computing feature maps of N-Dimensional images using well-known texture analysis methods.

Shapevariationanalyzer ⭐ 6

Shape modeling and classification, extract shape features

Slicerablationplanner ⭐ 6

Ablation Planner

Osteotomyplanner ⭐ 6

Filmdosimetryanalysis ⭐ 6

3D Slicer extension containing a slicelet called Film Dosimetry Analysis. It is a 2D dosimetry tool used in commissioning new radiation techniques and to validate the accuracy of radiation treatment by enabling visual comparison of the planned dose to the delivered dose

Slicerdevelopertoolsforextensions ⭐ 6

Set of tools to help developers when creating new Slicer extensions

Slicermarkupstomodel ⭐ 6

3D Slicer extension to create tube or closed surface model from markup fiducials

Slicerlanguagepacks ⭐ 6

3D Slicer extension for creating, editing, and storing translations for Slicer core and extensions

Slicercbm ⭐ 5

Computational Biophysics for Medicine in 3D Slicer

Slicerskeletalrepresentation ⭐ 5

Collection of Skeletal Model Extensions for 3D Slicer/SlicerSALT

Slicerdiffusionqc ⭐ 5

Quality checking of DWMRI

Slicerbiomech ⭐ 5

Extension for the collection and analysis of biomechanical data from 3D specimen data

Meshtolabelmap ⭐ 5

Slicerstereotaxia ⭐ 5

Slicer stereotatic frame 3D coordinates calculus.-

Slicerbigimage ⭐ 5

Large (GB and above) scale microscopic image computing using 3D Slicer

Slicer Bonethicknessmapping ⭐ 5

3D Slicer module that creates a gradient map representing the bone thickness of a volume using VTK ray-casting.

Slicersurfacetoolbox ⭐ 5

Supports various cleanup and optimization processes on surface models

Slicermrunner ⭐ 5

Beta Version. Browse and run all mhub models directly within 3D Slicer.

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