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Hic_data ⭐ 128

A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models

Hic Data Analysis Bootcamp ⭐ 78

Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.

TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C

3d Genome Processing Tutorial ⭐ 28

A 3D genome data processing tutorial for ISMB/ECCB 2017

Best Labs Of 3d Genome ⭐ 8

Data and the co-authored network I extracted for lab selection in 3D genome research field

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