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19 search results found

Ampliseq ⭐ 141

Amplicon sequencing analysis workflow using DADA2 and QIIME2

Flextaxd ⭐ 54

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

Rdptools ⭐ 36

Collection of commonly used RDP Tools for easy building

Compare different differential abundance and expression methods

Microbiomeutilities ⭐ 29

The is mostly a wrapper tool using phyloseq and microbiome R packages.

Various functions for analysis of microbial community data

SINA - Reference based multiple sequence alignment

Porefile ⭐ 19

A Nextflow full-length 16S profiling pipeline for ONT reads

Microbiome Analysis Using R ⭐ 17

Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.

Phylotoast ⭐ 12

Tools for phylogenetic data analysis including visualization and cluster-computing support.

Dadaist2 ⭐ 11

Dadaist2 🟨 Highway to R

💯 Snakemake-based amplicon processing protocol for 16S and ITS sequences.

Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"

Db.rna16s ⭐ 8

A comprehensive, compact, and automatically curated 16S database

16s Rdna V3 V4 ⭐ 8

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

Dada2_guidelines ⭐ 8

A repository with a general dada2 pipeline for amplicon processing

Esp Seplos Controller ⭐ 6

Seplos Controller mit Webseite Der Esp8266 ist über ein Rs485 Modul mit dem Seplos BMS verbunden und kann diesem seine Daten entlocken. Shutdown Button: Das BMS wird ausgeschaltet , selbe Art als ob man länger auf dem BMS tastschalter bleibt. Kurzum die Firmware die es hier zum Download gibt, liest das Bms aus und es lässt sich per Button Klick abschalten. Es fehlen derzeit noch die Warnings . Was kann der ESP8266 Seplos Controller : Mqtt Schnittstelle, Payload ist ein Json Array , die Topic

V Xtractor ⭐ 5

Repository for V-Xtractor an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

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1-19 of 19 search results

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