Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for computational biology
computational-biology
x
249 search results found
Deep Learning Health Life Sciences
⭐
8
Workshop on Deep Learning for Health and Life Sciences
Agebioportal
⭐
7
R Shiny web application for aging-related diseases
Advancesyntoolkit
⭐
7
Toolkit for Modelling and Simulation of Gene Expressions and Metabolism
Mapp
⭐
7
🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.
Iscb Diversity
⭐
7
Analyzing diversity of ISCB keynote speakers & fellows compared to the field of bioinformatics
Optimus_bind_sample
⭐
7
Designed to optimize the time/accuracy trade-off in predicting the effects of mutations on protein-protein binding
Empress
⭐
7
Systematic Cophylogeny Reconciliation Tool under Duplication-Transfer-Loss Model.
Intro_to_param_estim
⭐
7
Parameter estimation of ODE models describing biological processes
Humanbehavioralcomplexity
⭐
7
Data from "Human behavioral complexity peaks at age 25", Gauvrit et al., PLOS Computational Biology, 2017
Docs
⭐
7
Documentation on St. Jude Cloud.
Munk
⭐
7
A MUlti-species Network Kernel algorithm to embed proteins from a target network into a source network, creating cross-species representations for various comparative and predictive tasks
Cdeepbind
⭐
7
cDeepbind: A context sensitive deep learning model of RNA-protein binding
Bicbpy
⭐
7
Bioinformatics and Computational Biology with Python
Biosimulators_test_suite
⭐
7
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
Wc_lang
⭐
7
Language for describing whole-cell models as reaction networks
Open Science Rules
⭐
6
Collaboratively written manuscript discussing Ten Simple Rules for Enabling Open Science in Biomedical Research
Reproducible Research Guidelines
⭐
6
Guidelines for accountable and reproducible computational research
Man
⭐
6
Codes and data for the paper entitled "Learning representations to predict intermolecular interactions on large-scale heterogeneous molecular association network"
Gdock
⭐
6
Protein-Protein Docking using Genetic Algorithm
Benchmarkfdr Shiny
⭐
6
Shiny App for exploring results from "A practical guide to methods controlling false discoveries in computational biology"
Paper Notes
⭐
6
notes from machine learning, reinforcement learning and other papers
Pyfeat 2.x
⭐
6
Biological Feature Representation Tool form the Sequences
Vcell Solvers
⭐
6
Virtual Cell solvers
Livecomsjournal.github.io
⭐
6
Content for policy/instructional pages of the Living Journal of Computational Molecular Science (LiveCoMS)
Guidescan Web
⭐
6
A guideRNA design tool for the modern era.
Protein Recognition Index
⭐
6
Protein Recognition Index (PRI), measuring the similarity between H-bonding features in a given complex (predicted or designed) and the characteristic H-bond trends from crystallographic complexes
Graphery
⭐
6
A graph tutorial website
Alphabetr
⭐
6
R package for obtaining TCR alpha-beta sequence pairs
Research
⭐
6
Blog on PhD @ BMI ETH Zurich
Scphylo Tools
⭐
5
a python toolkit for single-cell tumor phylogenetic analysis
Ribo Oddr
⭐
5
Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
Kali
⭐
5
In silico therapeutic target discovery using network attractors: avoiding pathological phenotypes
Mica Aligner
⭐
5
MICA-aligner is a new short-read aligner that is optimized in view of MIC's limitation and the extra parallelism inside each MIC core.
Godseye
⭐
5
Monitor biomedical trends visually across ALL of PubMed + bioRxiv
Constellation Js
⭐
5
Library for combinatorially specifying, constraining, and exploring genetic design spaces.
Genbankpy
⭐
5
Tools to download, parse and filter GenBank files
Hbind
⭐
5
Calculates hydrogen-bond interaction tables for protein-small molecule complexes, based on protein PDB and protonated ligand MOL2 structure input. Raschka et al. (2018) J. Computer-Aided Molec. Design
Latex101
⭐
5
One hour lecture to introduce LaTeX to maths undergraduates.
Genespark
⭐
5
geneSpark is a bioinformatics software program written in Python and Apache Spark for big data epigenetic histone modification ChIP-seq analysis.
Gillespie
⭐
5
Gillespie Stochastic Simulation Algorithm
Wc_model_gen
⭐
5
Framework for systematically and scalably designing whole-cell models from large datasets
Mdnnmd
⭐
5
An implementation of multimodal deep neural network, a new model for human breast cancer prognosis prediction.
Cadena2019ploscb
⭐
5
Code for Cadena, S. A, et al. (2019). Deep convolutional models improve predictions of macaque V1 responses to natural images. Plos Computational Biology
Microberx
⭐
5
MicrobeRX
Compbio Edi
⭐
5
Curated summary of efforts to promote equity, diversity, and inclusion in computational biology PhD programs and societies.
3d Vertex Model
⭐
5
vertex model implementation to simulate biological tissue in 3D
Simulated Evolution
⭐
5
Artificial Life Simulation of Bacteria Motion depending on DNA
Genomenlp
⭐
5
Slow5 Rs
⭐
5
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
201-249 of 249 search results
< Previous
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.