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Search results for proteomics
proteomics
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228 search results found
Mscoreutils
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16
Core Utils for Mass Spectrometry Data
Pride Inspector
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15
PRIDE Inspector is a Java desktop application to visualise and Quality Assessment on Mass Spectrometry data and Proteomics
Enrich_omics
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15
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
Rformassspectrometry
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15
The R for Mass Spectrometry meta-package
Morpheus
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15
Morpheus mass spectrometry–based proteomics database search algorithm
Iq
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15
An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
Normalyzerde
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14
Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
Meta Proteome Analyzer
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14
MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
Geckopy
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14
Enzyme-constrained genome-scale models in python
Omics
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14
CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics
Kineticlearning
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13
Learning Kinetic Models from Time Series Proteomics and Metabolomics Data
Artms
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13
Analytical R Tools for Mass Spectrometry
Bacnet
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12
BACNET is a Java based platform to develop website for multi-omics analysis
Pfind3
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12
Crosslink Viewer
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12
web based visualisation of CLMS data
Sdrf Pipelines
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12
A repository to convert SDRF proteomics files into pipelines config files
Mspire
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11
mass spectrometry proteomics in ruby
Pomashiny
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11
🍎 Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
Mmtf Proteomics
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11
Methods for mapping proteomics data on 3D protein structure.
Feser
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11
feseR: Combining feature selection methods for analyzing omics data
Proloc
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11
A unifying bioinformatics framework for organelle proteomics
Pcprophet
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11
Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets
Isoprot
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11
Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering
Crawdad
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11
Cell-type Relationship Analysis Workflow Done Across Distances
Photon
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11
PHOsphoproteomic dissecTiOn using Networks
Biojs Frontend
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11
Frontend repository for BioJS.
Mayinstitute2017
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11
Material for the 2017 May Institute
Deeppep
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10
Deep proteome inference from peptide profiles
Scope2
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10
Dart Id
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10
DART-ID: retention time alignment and peptide identification confidence updates
Olssen
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10
OnLine Spectral Search ENgine for Proteomics big data using Apache Spark, Python/Flask, and AngularJS
Sequence Database Curator
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10
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
Ms Data Core Api
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10
Open-source java library to handle different file format standards for proteomics. Specially ms-data-core-api is good for MetaData representation.
Msimpute
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10
Methods for label-free mass spectrometry proteomics
Pridepy
⭐
9
Python client for PRIDE Archive Rest API.
Isobar
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9
isobar - R library for the Analysis and quantitation of isobarically tagged MSMS proteomics data
Pymultiomics
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9
Python toolbox for multi-omics data mapping and analysis
Irs_normalization
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9
An exploration of internal reference scaling (IRS) normalization in isobaric tagging proteomics experiments.
Sdk
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9
Software solution for common top-down proteomics tasks
Shannonmets
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9
** Blood metabolome predicts gut microbiome α-diversity in humans**
Promor
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9
A comprehensive R package for label-free proteomics data analysis and modeling
Pythonproteomics
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9
A collection of available Python tools for Proteomics analysis
Secretsanta
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9
flexible pipelines for scalable secretome prediction, R package
Protein Contaminant Libraries For Dda And Dia Proteomics
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9
This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C..(Publication pending) This project aims to provide contaminant protein FASTA and spectral libraries that can be universally applied to DDA and DIA proteomics and freely accessible for the proteomics community.
Protk
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9
Proteomics Toolkit in Ruby
Mzidlib
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9
MzidLib - A library of routines for manipulating data in the PSI's mzIdentML standard.
Quantms
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9
Quantitative mass spectrometry workflow.
Humos
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9
HUMOS is a web application aimed to help teaching Orbitrap mass spectrometry. HUMOS models a mass spectrum of a peptide mixture allowing to investigate the influence of mass spectral acquisition parameters. By changing the parameters and observing the differences one can learn more about mass spectral resolution, duty cycle, the throughput of the analysis, ion accumulation, spectral dynamic range, and get familiar with advanced spectral acquisition methods, such as BoxCar.
Protviz
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9
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
Pyproct
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8
pyProCT is an open source cluster analysis software especially adapted for jobs related with structural proteomics. Its approach allows users to define a clustering goal (clustering hypothesis) based on their domain knowledge. This hypothesis will guide the software in order to find the best algorithm and parameters (including the number of clusters) to obtain the result that fulfills their expectatives. In this way users do not need to use cluster analysis algorithms as a black box, improving t
Pyproteome
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8
Python library for analyzing mass spectrometry proteomics data.
Ionmob
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8
An open-source prediction framework for peptide ion collision cross section (CCS) values with python.
Hitmap
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8
An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics
Nparc
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8
Nonparametric Analysis of Response Curves from Thermal Proteome Profiling Experiments
Specter
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8
Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics
Amp_phase1_ra
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8
🌾 Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.
Lgatto.github.io
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8
My github page
Seminar
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8
Workflow Testing
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8
Automated testing of workflows against Galaxy
Jsparklines
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8
Sparklines for java tables
Ald Study
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8
ALD study data analysis
Deepquality
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8
Deep Learning for Mass Spectra Quality Assessment
Xirt
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8
Multi-Dimensional Retention Time Prediction for Linear and Crosslinked Peptides
Phage Host Prediction
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7
Published in PLOS ONE. We show that using embeddings of receptor-binding proteins presents improvements over handcrafted genomic and protein sequence features for phage-host interaction prediction — with the highest performance obtained using the transformer-based protein language model ProtT5
Histojs
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7
HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
Prospect
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7
Proteomics Mass Spectrometry Datasets for Machine Learning
Docker Galaxyp
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7
🐳 Galaxy Docker repository with tools for proteomics (GalaxyP flavour)
Rustyms
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7
A rust library for parsing Pro Forma peptides and matching them against MS spectra
Inf
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7
SCALLOP-INF analysis
Book
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7
R for Mass Spectrometry documentation
Psp
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7
Python scripts for data processing and analysis of P100 and GCP data
Monocle
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7
Monocle is a tool for monoisotopic peak and accurate precursor m/z detection in shotgun proteomics experiments.
Cohorts
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7
A python package for standardized and reproducible processing, analysis, and integration of clinical proteomics data
Curve_curator
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7
Analysis platform for large-scale dose-dependent data
Nf Workflows
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7
Repository of Nextflow+BioContainers workflows
Tmt_analysis_examples
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7
Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
Generator Biojs Webcomponents
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7
Generate all the boilerplate for your next BioJS tool!
Pyfeat 2.x
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6
Biological Feature Representation Tool form the Sequences
Patpat
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6
Patpat: A Python-based framework for searching public proteomics datasets
Atlas Heatmap
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6
Heatmap visualizing Expression Atlas data
Scientific Spammers
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6
A shared blacklist of e-mail addresses that spams scientists via exploiting the corespondance address of an article
Msstatsptm
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6
Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments
Biocmeetup
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6
Avant_garde
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6
Avant-garde (AvG) is a new tool to refine Data-Independent Acquisition (and Parallel Reaction Monitoring) by removing interfered transitions, adjusting integration boundaries and scoring peaks to control the FDR.
Perseusr
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6
R package for easy interop between Perseus and R
Somalogic
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6
SomaLogic data analysis
Prolocgui
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6
Interactive visualisation and exploration of spatial proteomics data
Mzrecal
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6
Recalibrate Mass Spectrometry data in mzML format
Splicevista
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6
Splice variant analysis in shotgun proteomics data
Peptagram
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6
HTML5 interactive visualisations of proteomic experiments
Uniprot Mongodb
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6
Msviz Backend
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6
A mass spectrometry visualization platform, developed by the PAF & Vital-IT, Swiss Institute of Bioinformatics.
Cse185 Spring18
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6
Course website for CSE Spring 2018
Motrpacbicqc
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6
R package for the MoTrPAC community
Py Pgatk
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6
Python tools for proteogenomics analysis toolkit
Pixelator
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6
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
Reproduciblemsguidelines
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6
This project aims at defining a set of guidelines for reproducible mass spectrometry-based experiments.
Msquality
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6
Msstatsconvert
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6
Converter functions for the MSstats package
Provision
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6
Shiny app for proteomics data analysis
Related Searches
Python Proteomics (125)
Protein Proteomics (117)
R Proteomics (112)
Bioinformatics Proteomics (78)
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