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The Top 9 Variant Calls Open Source Projects

Open source projects categorized as Variant Calls
Categories > Variant Calls
Benchmarking Tools ⭐ 110
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
most recent commit 4 years ago
Grenepipe ⭐ 75
A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.
most recent commit 4 months ago
Teamteri ⭐ 50
Genomics (computational bioinformatic data analysis) running on GCP, AWS or Azure
most recent commit 8 months ago
Csv2vcf ⭐ 41
🔧 Simple script in python to convert CSV files to VCF
total releases 1most recent commit 5 years ago
Seqarray ⭐ 41
Data management of large-scale whole-genome sequence variant calls (Development version only)
most recent commit 3 months ago
Starfish ⭐ 17
Intersect multiple VCF files with haplotype awareness
most recent commit 3 years ago
Umccrise ⭐ 14
🐍 DRAGEN Tumor/Normal workflow post-processing
most recent commit 8 months ago
Pyseqarray ⭐ 12
PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)
most recent commit 7 years ago
Genericlistcpp ⭐ 6
An implementation of a generic ArrayList and a generic LinkedList in cpp which can store multiple data type variables.
most recent commit 4 months ago
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