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The Top 23 Tcga Open Source Projects

Open source projects categorized as Tcga
Categories > Tcga
Maftools ⭐ 400
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
most recent commit 3 months ago
Tcgabiolinks ⭐ 255
TCGAbiolinks
most recent commit 5 months ago
Ucscxenatools ⭐ 93
📦 An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTo
dependent packages 2total releases 35most recent commit 3 months ago
Cognoma ⭐ 91
Putting machine learning in the hands of cancer biologists
most recent commit 6 years ago
Genomicdatacommons ⭐ 80
Provide R access to the NCI Genomic Data Commons portal.
most recent commit 4 months ago
Multiassayexperiment ⭐ 67
Bioconductor package for management of multi-assay data
most recent commit 3 months ago
Pancancer ⭐ 61
Building classifiers using cancer transcriptomes across 33 different cancer-types
most recent commit 5 years ago
Tcga_segmentation ⭐ 57
Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
most recent commit 3 years ago
Pathway Mapper ⭐ 52
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
dependent packages 2total releases 15most recent commit a year agonpm pathway-mapper} Downloads
Easytcga ⭐ 45
Make TCGA download and prepare easy!
most recent commit 4 months ago
Biobombe ⭐ 44
BioBombe: Sequentially compressed gene expression features enhances biological signatures
most recent commit 3 years ago
Tcgaworkflow ⭐ 37
TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
most recent commit 10 months ago
Psichomics ⭐ 33
Interactive R package to quantify, analyse and visualise alternative splicing
most recent commit 3 months ago
Tcgautils ⭐ 20
Toolbox package for organizing and working with TCGA data
most recent commit 3 months ago
Neural Ensemble Method For Cancer Prediction ⭐ 15
A Snapshot Neural Ensemble Method for Cancer Type Prediction Based on Copy Number Variations
most recent commit 4 years ago
Cancer Data ⭐ 14
TCGA data acquisition and processing for Project Cognoma
most recent commit 6 years ago
Gdc Rnaseq Tool ⭐ 14
Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode
most recent commit 5 years ago
Smartas ⭐ 13
📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
most recent commit 6 years ago
Cancer_data ⭐ 11
A unified downloader+preprocessor for cancer genomics datasets
total releases 12most recent commit a year ago
Webgen ⭐ 8
WebGen Vertically Integrated Project
most recent commit 8 months ago
Multiassayexperiment.tcga ⭐ 7
most recent commit a year ago
Cg ⭐ 5
CG - cancer genomics pipeline
most recent commit 2 years ago
Vaecox ⭐ 5
ISMB 2020: Improved survival analysis by learning shared genomic information from pan-cancer data
most recent commit 4 years ago
The 2 Most Depended On Tcga Open Source Projects
The 3 Latest Releases In Tcga Open Source Projects
Pathway Mapper ⭐ 52
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
dependent packages 2total releases 15latest release May 26, 2023most recent commit a year agonpm pathway-mapper} Downloads
Cancer_data ⭐ 11
A unified downloader+preprocessor for cancer genomics datasets
total releases 12latest release January 08, 2022most recent commit a year ago
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