Cancer_data
A unified downloader+preprocessor for cancer genomics datasets
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Genomicsnotebook | 84 | 6 months ago | mit | Jupyter Notebook | ||||||
| Jupyter Notebooks on Azure for Genomics Data Analysis | ||||||||||
| Tiledb Vcf | 79 | 3 months ago | 18 | mit | C++ | |||||
| Efficient variant-call data storage and retrieval library using the TileDB storage library. | ||||||||||
| Genomic_benchmarks | 52 | 5 months ago | 8 | August 10, 2022 | 7 | apache-2.0 | Jupyter Notebook | |||
| Benchmarks for classification of genomic sequences | ||||||||||
| Duo | 48 | 2 years ago | 55 | other | Makefile | |||||
| Ontology for consent codes and data use requirements | ||||||||||
| Mulan | 47 | 2 years ago | 17 | Java | ||||||
| Chm Eval | 37 | 4 years ago | 2 | mit | TeX | |||||
| Mindthegap | 30 | 2 years ago | 5 | agpl-3.0 | C++ | |||||
| MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool. | ||||||||||
| Cbioportaldata | 29 | 3 months ago | 4 | R | ||||||
| Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment | ||||||||||
| Zinbwavezinger | 21 | 6 years ago | 1 | TeX | ||||||
| Integrating zingeR with ZINB-WaVE weights | ||||||||||
| Wgs2ncbi | 18 | 3 years ago | 7 | bsd-3-clause | Perl | |||||
| Toolkit for preparing genomes for submission to NCBI | ||||||||||
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Cancer Genomics