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The Top 23 Structural Biology Open Source Projects

Open source projects categorized as Structural Biology
Categories > Structural Biology
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29most recent commit 5 months agopypi graphein} Downloads
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5most recent commit 4 months agopypi molecularnodes} Downloads
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52most recent commit 5 months agopypi biotite} Downloads
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38most recent commit 6 months agopypi pdb-tools} Downloads
Sidechainnet ⭐ 256
An all-atom protein structure dataset for machine learning.
dependent packages 4total releases 11most recent commit a year agopypi sidechainnet} Downloads
Lightdock ⭐ 234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
most recent commit 5 months ago
Gemmi ⭐ 180
macromolecular crystallography library and utilities
dependent packages 41total releases 48most recent commit 4 months agopypi gemmi} Downloads
Ssbio ⭐ 96
A Python framework for structural systems biology
total releases 20most recent commit 3 years ago
Freesasa ⭐ 95
C-library for calculating Solvent Accessible Surface Areas
most recent commit 6 months ago
Atomium ⭐ 92
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
total releases 4most recent commit a year ago
Pensa ⭐ 77
PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
total releases 11most recent commit 6 months ago
Biostructures.jl ⭐ 77
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
most recent commit 5 months ago
Computational Cryoem ⭐ 73
A curated list of awesome computational cryo-EM methods.
most recent commit 5 months ago
Imp ⭐ 64
The Integrative Modeling Platform
total releases 3most recent commit 5 months ago
Ball ⭐ 61
The Biochemical Algorithms Library
most recent commit 2 years ago
Equifold ⭐ 59
Official code repository for EquiFold
most recent commit a year ago
Toolkit ⭐ 57
The MPI Bioinformatics Toolkit
most recent commit 5 months ago
Vscoding Sequence ⭐ 56
VSCode Extension for interactively visualising protein structure data in the editor
most recent commit 2 years ago
Ipymol ⭐ 47
Control PyMOL sessions via IPython
total releases 4most recent commit 2 years ago
Haddock Tools ⭐ 41
Set of useful HADDOCK utility scripts
most recent commit 8 months ago
Freesasa Python ⭐ 39
FreeSASA Python Module
most recent commit 7 months ago
Structural Bioinformatics ⭐ 34
This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the University of Milano, originally inspired by https://github.com/pb3lab/ibm3202
most recent commit 5 months ago
Bio3dview.jl ⭐ 32
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
most recent commit 9 months ago
The 7 Most Depended On Structural Biology Open Source Projects
Gemmi ⭐ 180
macromolecular crystallography library and utilities
dependent packages 41total releases 48latest release December 13, 2023most recent commit 4 months agopypi gemmi} Downloads
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52latest release September 09, 2023most recent commit 5 months agopypi biotite} Downloads
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38latest release June 23, 2022most recent commit 6 months agopypi pdb-tools} Downloads
Sidechainnet ⭐ 256
An all-atom protein structure dataset for machine learning.
dependent packages 4total releases 11latest release November 02, 2023most recent commit a year agopypi sidechainnet} Downloads
Rmf ⭐ 6
The library to support reading and writing of RMF files.
dependent packages 1total releases 3latest release March 11, 2022most recent commit 6 months ago
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5latest release December 05, 2023most recent commit 4 months agopypi molecularnodes} Downloads
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 5 months agopypi graphein} Downloads
The 10 Latest Releases In Structural Biology Open Source Projects
Gemmi ⭐ 180
macromolecular crystallography library and utilities
dependent packages 41total releases 48latest release December 13, 2023most recent commit 4 months agopypi gemmi} Downloads
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5latest release December 05, 2023most recent commit 4 months agopypi molecularnodes} Downloads
Sidechainnet ⭐ 256
An all-atom protein structure dataset for machine learning.
dependent packages 4total releases 11latest release November 02, 2023most recent commit a year agopypi sidechainnet} Downloads
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 5 months agopypi graphein} Downloads
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52latest release September 09, 2023most recent commit 5 months agopypi biotite} Downloads
Mdciao ⭐ 26
mdciao: Analysis of Molecular Dynamics Simulations Using Residue Neighborhoods
total releases 10latest release August 08, 2023most recent commit 4 months ago
Packman ⭐ 28
PACKMAN: PACKing and Motion ANalysis
total releases 35latest release August 03, 2023most recent commit 4 months ago
Imp ⭐ 64
The Integrative Modeling Platform
total releases 3latest release September 17, 2022most recent commit 5 months ago
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38latest release June 23, 2022most recent commit 6 months agopypi pdb-tools} Downloads
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