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The Top 6 Vcf Somatic Variants Open Source Projects

Open source projects categorized as Vcf Somatic Variants
Categories > Somatic Variants
Categories > Science > Vcf
Somaticseq ⭐ 185
An ensemble approach to accurately detect somatic mutations using SomaticSeq
total releases 1most recent commit 7 months ago
Sigprofilerextractor ⭐ 132
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
dependent packages 3total releases 50most recent commit 6 months agopypi SigProfilerExtractor} Downloads
Germline Dna ⭐ 23
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
most recent commit a year ago
Helmsman ⭐ 19
highly-efficient & lightweight mutation signature matrix aggregation
most recent commit 3 years ago
Sigprofilermatrixgeneratorr ⭐ 17
R wrapper for utilizing the SigProfilerMatrixGenerator framework
most recent commit a year ago
Sigprofilerextractorr ⭐ 11
An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
most recent commit a year ago
The 2 Latest Releases In Vcf Somatic Variants Open Source Projects
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