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The Top 13 Single Cell Seurat Open Source Projects

Open source projects categorized as Single Cell Seurat
Categories > Seurat
Categories > Single Cell
Scp ⭐ 253
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
most recent commit 4 months ago
Sccatch ⭐ 171
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
total releases 5most recent commit a year ago
Sccustomize ⭐ 142
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
total releases 5most recent commit 3 months ago
Tidyseurat ⭐ 131
Seurat meets tidyverse. The best of both worlds.
total releases 14most recent commit 3 months ago
Scpubr ⭐ 117
Generate high quality, publication ready visualizations for single cell transcriptomics data.
total releases 11most recent commit 3 months ago
Cirrocumulus ⭐ 55
Bring your single-cell data to life
total releases 147most recent commit 5 months ago
Seuratv3wizard ⭐ 26
A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3
most recent commit 4 years ago
Seurat.utils ⭐ 19
Various utility functions for Seurat single-cell analysis
most recent commit 3 months ago
Tidygate ⭐ 18
Label elements within user drawn gates
total releases 1most recent commit 5 months ago
Scmiko ⭐ 17
R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.
most recent commit a year ago
Nasqar ⭐ 10
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
most recent commit 4 years ago
Apackoftheclones ⭐ 10
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
total releases 2most recent commit 3 months ago
Seuratwizard ⭐ 7
This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat.
most recent commit 5 years ago
The 7 Latest Releases In Single Cell Seurat Open Source Projects
Tidyseurat ⭐ 131
Seurat meets tidyverse. The best of both worlds.
total releases 14latest release November 28, 2023most recent commit 3 months ago
Scpubr ⭐ 117
Generate high quality, publication ready visualizations for single cell transcriptomics data.
total releases 11latest release October 11, 2023most recent commit 3 months ago
Cirrocumulus ⭐ 55
Bring your single-cell data to life
total releases 147latest release September 29, 2023most recent commit 5 months ago
Sccatch ⭐ 171
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
total releases 5latest release April 23, 2023most recent commit a year ago
Tidygate ⭐ 18
Label elements within user drawn gates
total releases 1latest release February 21, 2022most recent commit 5 months ago
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