Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Rna Seq Single Cell Open Source Projects

Open source projects categorized as Rna Seq Single Cell
Categories > Rna Seq
Categories > Single Cell
Salmon ⭐ 661
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
most recent commit 8 months ago
Single Cell Best Practices ⭐ 544
https://www.sc-best-practices.org
most recent commit 4 months ago
Single Cell Pseudotime ⭐ 367
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
most recent commit 3 months ago
Scrna Tools ⭐ 295
Table of software for the analysis of single-cell RNA-seq data.
most recent commit 20 hours ago
Mixcr ⭐ 291
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
most recent commit 3 months ago
Zumis ⭐ 232
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
most recent commit a year ago
Youtubetutorials ⭐ 180
most recent commit 4 months ago
Sccatch ⭐ 171
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
total releases 5most recent commit a year ago
Dittoseq ⭐ 153
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
most recent commit 5 months ago
Kana ⭐ 131
Single cell analysis in the browser
most recent commit 4 days ago
Scrnaseq ⭐ 119
A single-cell RNAseq pipeline for 10X genomics data
most recent commit 3 months ago
Alevin Fry ⭐ 115
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
dependent packages 2total releases 10most recent commit 10 months agocargo libradicl} Downloads
Powsimr ⭐ 102
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
most recent commit 9 months ago
Scrnaseqpipeline ⭐ 73
most recent commit 6 years ago
Scnym ⭐ 71
Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
total releases 5most recent commit 4 months ago
Single Cell Training ⭐ 63
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
most recent commit 5 months ago
Covid 19 Rna Seq Datasets ⭐ 61
A repository for sharing information on available COVID-19 RNA-Seq datasets
most recent commit 2 years ago
Kallistobustools ⭐ 55
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
most recent commit 3 years ago
Scflow ⭐ 50
Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
most recent commit 3 months ago
Cell2cell ⭐ 44
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
most recent commit 5 months ago
Itclust ⭐ 39
Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis
total releases 5most recent commit 2 years ago
Cellsnp ⭐ 37
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
total releases 14most recent commit 3 years ago
Scribe Py ⭐ 36
Regulatory networks with Direct Information in python
most recent commit a year ago
The 8 Latest Releases In Rna Seq Single Cell Open Source Projects
Sccatch ⭐ 171
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
total releases 5latest release April 23, 2023most recent commit a year ago
Uncurl_python ⭐ 14
UNCURL is a tool for single cell RNA-seq data analysis.
total releases 12latest release June 27, 2022most recent commit 2 years ago
Scnym ⭐ 71
Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
total releases 5latest release March 25, 2021most recent commit 4 months ago
Cellsnp ⭐ 37
Pileup biallelic SNPs from single-cell and bulk RNA-seq data
total releases 14latest release August 03, 2020most recent commit 3 years ago
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.