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The Top 23 Protein Structure Structural Biology Open Source Projects

Open source projects categorized as Protein Structure Structural Biology
Categories > Protein Structure
Categories > Structural Biology
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29most recent commit 4 months agopypi graphein} Downloads
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5most recent commit 3 months agopypi molecularnodes} Downloads
Sidechainnet ⭐ 256
An all-atom protein structure dataset for machine learning.
dependent packages 4total releases 11most recent commit 10 months agopypi sidechainnet} Downloads
Lightdock ⭐ 234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
most recent commit 3 months ago
Gemmi ⭐ 180
macromolecular crystallography library and utilities
dependent packages 41total releases 48most recent commit 3 months agopypi gemmi} Downloads
Ssbio ⭐ 96
A Python framework for structural systems biology
total releases 20most recent commit 3 years ago
Biostructures.jl ⭐ 77
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
most recent commit 4 months ago
Imp ⭐ 64
The Integrative Modeling Platform
total releases 3most recent commit 3 months ago
Toolkit ⭐ 57
The MPI Bioinformatics Toolkit
most recent commit 4 months ago
Vscoding Sequence ⭐ 56
VSCode Extension for interactively visualising protein structure data in the editor
most recent commit a year ago
Bio3dview.jl ⭐ 32
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
most recent commit 8 months ago
Packman ⭐ 28
PACKMAN: PACKing and Motion ANalysis
total releases 35most recent commit 3 months ago
Mdciao ⭐ 26
mdciao: Analysis of Molecular Dynamics Simulations Using Residue Neighborhoods
total releases 10most recent commit 3 months ago
Protein Transformer ⭐ 25
Predicting protein structure through sequence modeling
most recent commit 4 years ago
De Stress ⭐ 13
DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
most recent commit 9 months ago
Pmi ⭐ 12
Python Modeling Interface
most recent commit 4 months ago
Funfoldesdata ⭐ 12
Rosetta FunFolDes – a general framework for the computational design of functional proteins.
most recent commit 5 years ago
Zincbinddb ⭐ 10
The database and API backend for ZincBind - the database of zinc binding sites
most recent commit 3 years ago
Pymissense ⭐ 9
PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
most recent commit 6 months ago
Peppy ⭐ 7
A VR app which allows creation and manipulation of dynamic models of polypeptides. Focus is fun and learning.
most recent commit 4 years ago
Surfstamp Public ⭐ 7
3D Printer Compatible Molecular Surface Representation (Do not clone! Everything is in the release page!)
most recent commit 2 years ago
Unity Protein Visualization ⭐ 6
Protein Visualization using Unity and C# analysis on PDB Files.
most recent commit a year ago
Gdock ⭐ 6
Protein-Protein Docking using Genetic Algorithm
most recent commit 2 years ago
The 5 Most Depended On Protein Structure Structural Biology Open Source Projects
Gemmi ⭐ 180
macromolecular crystallography library and utilities
dependent packages 41total releases 48latest release December 13, 2023most recent commit 3 months agopypi gemmi} Downloads
Sidechainnet ⭐ 256
An all-atom protein structure dataset for machine learning.
dependent packages 4total releases 11latest release November 02, 2023most recent commit 10 months agopypi sidechainnet} Downloads
Rmf ⭐ 6
The library to support reading and writing of RMF files.
dependent packages 1total releases 3latest release March 11, 2022most recent commit 4 months ago
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5latest release December 05, 2023most recent commit 3 months agopypi molecularnodes} Downloads
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 4 months agopypi graphein} Downloads
The 9 Latest Releases In Protein Structure Structural Biology Open Source Projects
Gemmi ⭐ 180
macromolecular crystallography library and utilities
dependent packages 41total releases 48latest release December 13, 2023most recent commit 3 months agopypi gemmi} Downloads
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5latest release December 05, 2023most recent commit 3 months agopypi molecularnodes} Downloads
Sidechainnet ⭐ 256
An all-atom protein structure dataset for machine learning.
dependent packages 4total releases 11latest release November 02, 2023most recent commit 10 months agopypi sidechainnet} Downloads
Graphein ⭐ 932
Protein Graph Library
dependent packages 1total releases 29latest release October 27, 2023most recent commit 4 months agopypi graphein} Downloads
Mdciao ⭐ 26
mdciao: Analysis of Molecular Dynamics Simulations Using Residue Neighborhoods
total releases 10latest release August 08, 2023most recent commit 3 months ago
Packman ⭐ 28
PACKMAN: PACKing and Motion ANalysis
total releases 35latest release August 03, 2023most recent commit 3 months ago
Imp ⭐ 64
The Integrative Modeling Platform
total releases 3latest release September 17, 2022most recent commit 3 months ago
Rmf ⭐ 6
The library to support reading and writing of RMF files.
dependent packages 1total releases 3latest release March 11, 2022most recent commit 4 months ago
Ssbio ⭐ 96
A Python framework for structural systems biology
total releases 20latest release March 05, 2019most recent commit 3 years ago
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