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The Top 21 Pipeline Sequencing Open Source Projects

Open source projects categorized as Pipeline Sequencing
Categories > Data Processing > Pipeline
Categories > Science > Sequencing
Ngs580 Nf ⭐ 7
Target exome sequencing analysis for NYU NGS580 gene panel
most recent commit 4 years ago
Fonda ⭐ 7
Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types
most recent commit 2 years ago
Fast ⭐ 7
FAST is an Amplicon Sequencing Toolbox v1.2
total releases 4most recent commit 6 years ago
Mirna Seq Pipeline ⭐ 7
most recent commit 2 years ago
Quivergrid ⭐ 7
Quiver wrapper for SGE
most recent commit 7 years ago
Braincode ⭐ 7
Script and pipeline for BRAINcode project
most recent commit 3 years ago
Harpy ⭐ 6
Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
most recent commit 3 months ago
Cg Pipeline ⭐ 6
Genome assembly/prediction/annotation pipeline for the Linux command line
most recent commit 5 years ago
Pyinseq ⭐ 6
Python pipeline for analyzing INSeq Insertion Sequencing data
total releases 6most recent commit 2 years ago
Ngs ⭐ 6
Next-generation sequencing analysis pipelines & scrips
most recent commit 3 years ago
Mouseexomesequencing ⭐ 6
A pipeline for variant calling from exome sequence data from murine tumors.
most recent commit 5 years ago
Rna Seq Analysis ⭐ 6
The analytic pipeline used for RNA Sequencing
most recent commit 8 years ago
Cirrus Ngs ⭐ 5
total releases 1most recent commit 4 years ago
Celseq2 ⭐ 5
Generate the UMI count matrix from CEL-Seq2 sequencing data
most recent commit 6 years ago
Allmine ⭐ 5
AllMine, a flexible pipeline for Allele Mining. Develloped at INRA's GAFL unit :
most recent commit 5 years ago
Bug Flow ⭐ 5
most recent commit 5 years ago
Flea Pipeline ⭐ 5
A pipeline for long-read sequencing data.
most recent commit 6 years ago
Pdxblacklist ⭐ 5
most recent commit 7 years ago
Lnisks ⭐ 5
most recent commit 3 months ago
Graph Iss ⭐ 5
Graph-based Decoding for In Situ Sequencing
most recent commit 4 years ago
Gs Preprocess ⭐ 5
most recent commit a year ago
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