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The Top 23 Pan Genome Open Source Projects

Open source projects categorized as Pan Genome
Categories > Pan Genome
Minigraph ⭐ 367
Proof-of-concept seq-to-graph mapper and graph generator
total releases 1most recent commit 7 months ago
Ppanggolin ⭐ 191
Build a partitioned pangenome graph from microbial genomes
total releases 6most recent commit 5 months ago
Get_homologues ⭐ 98
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
most recent commit 6 months ago
Pangraph ⭐ 72
A bioinformatic toolkit to align genome assemblies into pangenome graphs
most recent commit 6 months ago
Scoary ⭐ 71
Pan-genome wide association studies
total releases 16most recent commit 7 years ago
Panphlan ⭐ 39
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
total releases 2most recent commit 9 months ago
Panache ⭐ 34
Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence information of pangenomic blocks of sequence or genes in a browser-like display.
most recent commit a year ago
Panaligner ⭐ 33
Long read aligner for cyclic and acyclic pangenome graphs
most recent commit 6 months ago
Panseq ⭐ 31
Pan-genomic sequence analysis
most recent commit 7 years ago
Pangenome ⭐ 28
Renders a collection of sequences into a pangenome graph.
most recent commit a year ago
Panpop ⭐ 24
Application of pan-genome for population
most recent commit 6 months ago
Pancat ⭐ 24
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
most recent commit 5 months ago
Strainflair ⭐ 23
Strain-level abundances estimation in metagenomic samples using variation graphs
most recent commit a year ago
Pan Zea_construct ⭐ 21
Workflow to construct linear representation of pan genome from deep WGS data and public assemblies
most recent commit 8 months ago
Pagoo ⭐ 15
A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
total releases 3most recent commit a year ago
Ppspcp ⭐ 13
A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
most recent commit 3 years ago
Superpang ⭐ 9
Non-redundant pangenome assemblies from multiple genomes or bins
most recent commit 8 months ago
Sopang ⭐ 9
SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.
most recent commit 4 years ago
Pangenome_workflow ⭐ 6
luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, and finally perform pangenome analysis(roary).
most recent commit 7 months ago
Panz Sv Pipe ⭐ 6
Structure variants calling and genotyping scripts for pan-Zea
most recent commit 2 years ago
Bactprep ⭐ 6
Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)
most recent commit a year ago
Bovine Graphs ⭐ 6
Integrate multiple genome assemblies into a pangenome graph
most recent commit 2 years ago
Pangloss ⭐ 6
Pangenome analysis of eukaryotes.
most recent commit 5 years ago
The 5 Latest Releases In Pan Genome Open Source Projects
Minigraph ⭐ 367
Proof-of-concept seq-to-graph mapper and graph generator
total releases 1latest release June 21, 2023most recent commit 7 months ago
Pagoo ⭐ 15
A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
total releases 3latest release February 01, 2022most recent commit a year ago
Ppanggolin ⭐ 191
Build a partitioned pangenome graph from microbial genomes
total releases 6latest release July 15, 2018most recent commit 5 months ago
Scoary ⭐ 71
Pan-genome wide association studies
total releases 16latest release October 04, 2017most recent commit 7 years ago
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