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The Top 23 Nextflow Open Source Projects

Open source projects categorized as Nextflow
Categories > Nextflow
Deepvariant ⭐ 26
Deep Variant as a Nextflow pipeline
most recent commit 4 years ago
Proteinfold ⭐ 26
Protein 3D structure prediction pipeline
most recent commit 8 months ago
Gemmaker ⭐ 26
A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction
most recent commit a year ago
Nf Lo ⭐ 26
A Nextflow workflow to generate lift over files for any pair of genomes
most recent commit 9 months ago
Geneshot ⭐ 25
most recent commit 2 years ago
Pipeliner ⭐ 25
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
most recent commit 5 years ago
Rnatoy ⭐ 24
A proof of concept RNA-Seq pipeline with Nextflow
most recent commit 4 years ago
Rnavar ⭐ 23
gatk4 RNA variant calling pipeline
most recent commit 4 months ago
Wave ⭐ 23
On-demand containers provisioning service
most recent commit 4 months ago
Ngs Preprocess ⭐ 23
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
most recent commit 4 months ago
Compare_genomes ⭐ 23
A comparative genomics workflow using Nextflow, conda, Julia and R
most recent commit 7 months ago
Bionextflow ⭐ 22
A collection of modules and sub-workflows for Nextflow
most recent commit 4 months ago
Nextflowmodules ⭐ 22
UMCU Genetics Nextflow modules
most recent commit 10 months ago
Macse_v2_pipelines ⭐ 21
This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.
most recent commit 9 months ago
Naf_dataset ⭐ 21
Form images from U.S. National Archives annotated with text bounding boxes, classes, relationships, and transcription.
most recent commit 2 years ago
Clean ⭐ 21
A nextflow pipeline for decontamination of short reads, long reads and contigs
most recent commit 5 months ago
Nextflow Example ⭐ 20
A simple DSL2 workflow: tutorial
most recent commit a year ago
Spandx ⭐ 20
SPANDx - Comparative genomics for next-generation haploid sequence data
most recent commit 6 months ago
Rnaseq Nf ⭐ 20
RNAseq analysis pipeline
most recent commit 2 years ago
Kallisto Nf ⭐ 20
A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
most recent commit 6 years ago
Nanoflow ⭐ 20
🔬 De novo assembly of nanopore reads using nextflow
most recent commit 4 years ago
Variant_catalogue_pipeline ⭐ 20
Variant catalogue pipeline
most recent commit 5 months ago
Mop2 ⭐ 20
Master of Pores 2
most recent commit 7 months ago
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