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The Top 23 Python Neuroimaging Open Source Projects

Open source projects categorized as Python Neuroimaging
Categories > Machine Learning > Neuroimaging
Mne Python ⭐ 2,449
MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
dependent packages 187total releases 76most recent commit 3 months agopypi mne} Downloads
Slicer ⭐ 1,339
Multi-platform, free open source software for visualization and image computing.
most recent commit 3 months ago
Dltk ⭐ 1,293
Deep Learning Toolkit for Medical Image Analysis
most recent commit 2 years ago
Nilearn ⭐ 1,076
Machine learning for NeuroImaging in Python
most recent commit 3 months ago
Awesome Neuroscience ⭐ 974
A curated list of awesome neuroscience libraries, software and any content related to the domain.
most recent commit a year ago
Slicergitsvnarchive ⭐ 883
Multi-platform, free open source software for visualization and image computing.
most recent commit 4 years ago
Nipype ⭐ 707
Workflows and interfaces for neuroimaging packages
total releases 11most recent commit 5 months ago
Dipy ⭐ 647
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
most recent commit 3 months ago
Braindecode ⭐ 638
Deep learning software to decode EEG, ECG or MEG signals
dependent packages 3total releases 49most recent commit 4 months agopypi Braindecode} Downloads
Nibabel ⭐ 598
Python package to access a cacophony of neuro-imaging file formats
dependent packages 556total releases 40most recent commit 4 months agopypi nibabel} Downloads
Pycortex ⭐ 534
Pycortex is a python-based toolkit for surface visualization of fMRI data
dependent packages 1total releases 14most recent commit 4 months agopypi pycortex} Downloads
Nipy ⭐ 361
Neuroimaging in Python FMRI analysis package
most recent commit 4 months ago
Brainiak ⭐ 315
Brain Imaging Analysis Kit
total releases 15most recent commit 5 months ago
Intensity Normalization ⭐ 272
normalize the intensities of various MR image modalities
dependent packages 1total releases 16most recent commit a year agopypi intensity-normalization} Downloads
Bids Specification ⭐ 235
Brain Imaging Data Structure (BIDS) Specification
dependent packages 1total releases 8most recent commit 3 months agopypi bidsschematools} Downloads
Pysurfer ⭐ 229
Cortical neuroimaging visualization in Python
dependent packages 1total releases 1most recent commit 4 months ago
Clinica ⭐ 201
Software platform for clinical neuroimaging studies
dependent packages 1total releases 36most recent commit 3 months agopypi clinica} Downloads
Neuromaps ⭐ 193
A toolbox for comparing brain maps
total releases 4most recent commit 4 months ago
Neuromorphic Computing Guide ⭐ 191
Learn about the Neumorphic engineering process of creating large-scale integration (VLSI) systems containing electronic analog circuits to mimic neuro-biological architectures.
most recent commit 4 months ago
Nimare ⭐ 166
Coordinate- and image-based meta-analysis in Python
dependent packages 6total releases 34most recent commit 3 months agopypi NiMARE} Downloads
Tedana ⭐ 149
TE-dependent analysis of multi-echo fMRI
dependent packages 4total releases 21most recent commit 3 months agopypi tedana} Downloads
Clinicadl ⭐ 146
Framework for the reproducible processing of neuroimaging data with deep learning methods
total releases 31most recent commit 3 months ago
Nobrainer ⭐ 139
A framework for developing neural network models for 3D image processing.
total releases 16most recent commit 4 months ago
The 10 Most Depended On Python Neuroimaging Open Source Projects
Nibabel ⭐ 598
Python package to access a cacophony of neuro-imaging file formats
dependent packages 556total releases 40latest release April 03, 2023most recent commit 4 months agopypi nibabel} Downloads
Mne Python ⭐ 2,449
MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
dependent packages 187total releases 76latest release November 20, 2023most recent commit 3 months agopypi mne} Downloads
Fitz ⭐ 9
Modern Nipype Workflow Management based on Lyman
dependent packages 70total releases 2latest release February 25, 2017most recent commit 2 years agopypi fitz} Downloads
Niworkflows ⭐ 81
Common workflows for MRI (anatomical, functional, diffusion, etc)
dependent packages 12total releases 204latest release October 12, 2023most recent commit 3 months agopypi niworkflows} Downloads
Mne Bids ⭐ 110
MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.
dependent packages 10total releases 16latest release November 16, 2023most recent commit 3 months agopypi mne-bids} Downloads
Sdcflows ⭐ 27
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
dependent packages 6total releases 58latest release November 10, 2023most recent commit 3 months agopypi sdcflows} Downloads
Nimare ⭐ 166
Coordinate- and image-based meta-analysis in Python
dependent packages 6total releases 34latest release November 02, 2023most recent commit 3 months agopypi NiMARE} Downloads
Tedana ⭐ 149
TE-dependent analysis of multi-echo fMRI
dependent packages 4total releases 21latest release November 21, 2023most recent commit 3 months agopypi tedana} Downloads
Pyradigm ⭐ 24
Research data management in biomedical and machine learning applications
dependent packages 4total releases 21latest release July 22, 2020most recent commit a year agopypi pyradigm} Downloads
The 10 Latest Releases In Python Neuroimaging Open Source Projects
Smriprep ⭐ 111
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
dependent packages 4total releases 64latest release December 08, 2023most recent commit 4 months agopypi smriprep} Downloads
Junifer ⭐ 12
Forschungszentrum Jülich Neuroimaging Feature Extractor
total releases 108latest release December 04, 2023most recent commit 3 months ago
Nibabies ⭐ 19
Processing tools for magnetic resonance images of infant brains
total releases 25latest release November 22, 2023most recent commit 3 months ago
Tedana ⭐ 149
TE-dependent analysis of multi-echo fMRI
dependent packages 4total releases 21latest release November 21, 2023most recent commit 3 months agopypi tedana} Downloads
Mne Python ⭐ 2,449
MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
dependent packages 187total releases 76latest release November 20, 2023most recent commit 3 months agopypi mne} Downloads
Mne Bids ⭐ 110
MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.
dependent packages 10total releases 16latest release November 16, 2023most recent commit 3 months agopypi mne-bids} Downloads
Sdcflows ⭐ 27
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
dependent packages 6total releases 58latest release November 10, 2023most recent commit 3 months agopypi sdcflows} Downloads
Nimare ⭐ 166
Coordinate- and image-based meta-analysis in Python
dependent packages 6total releases 34latest release November 02, 2023most recent commit 3 months agopypi NiMARE} Downloads
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