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The Top 19 Neuroanatomy Open Source Projects

Open source projects categorized as Neuroanatomy
Categories > Neuroanatomy
Dipy ⭐ 647
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
most recent commit 5 months ago
Cellfinder ⭐ 172
Automated 3D cell detection in very large images
dependent packages 2total releases 92most recent commit a month agopypi cellfinder} Downloads
Brainreg ⭐ 103
Automated 3D brain registration with support for multiple species and atlases.
most recent commit 5 months ago
Quicknat_pytorch ⭐ 99
PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty
total releases 3most recent commit 3 years ago
Navis ⭐ 79
Python library for analysis of neuroanatomical data.
dependent packages 8total releases 32most recent commit 3 months agopypi navis} Downloads
Nat ⭐ 60
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
dependent packages 6total releases 21most recent commit 4 months ago
Assemblynet ⭐ 31
AssemblyNet: 3D Whole Brain MRI segmentation pipeline
most recent commit a year ago
Life ⭐ 29
Please use the new version of LiFE: www.github.com/brain-life/encode
most recent commit 7 years ago
Brainglobe Segmentation ⭐ 28
Segmentation of anatomical structures in a common coordinate space
most recent commit a month ago
Brainglobe Heatmap ⭐ 23
Rendering anatomical heatmaps with brainrender and matplotlib
most recent commit 6 months ago
Nat.nblast ⭐ 15
R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.
total releases 4most recent commit a year ago
Neuro ⭐ 11
Visualisation and analysis of brain imaging data
dependent packages 3total releases 35most recent commit 3 years agopypi neuro} Downloads
Brainar ⭐ 8
A neuroanatomy-based augmented reality experience powered by computer vision. Features 3D visuals of the Atlas Brain Map slices.
most recent commit 3 years ago
Rcatmaid ⭐ 8
R package providing API access to the CATMAID web image annotation tool
most recent commit 2 years ago
Elmr ⭐ 7
Support for working with light and electron microscopy fly brain data
most recent commit 10 months ago
Brain_data_standards_ontologies ⭐ 7
A repository for co-ordinating work on ontologies for the Brain Data Standards Project
most recent commit a year ago
Swcgeom ⭐ 6
Neuron geometry library for swc format.
most recent commit 5 months ago
Mouselightr ⭐ 6
Bridge HHMI Janelia MouseLight Database and nat R Package
most recent commit 4 years ago
Bakingtray ⭐ 6
Serial-section automated anatomy extension for ScanImage
most recent commit 2 years ago
The 4 Most Depended On Neuroanatomy Open Source Projects
Navis ⭐ 79
Python library for analysis of neuroanatomical data.
dependent packages 8total releases 32latest release July 28, 2023most recent commit 3 months agopypi navis} Downloads
Neuro ⭐ 11
Visualisation and analysis of brain imaging data
dependent packages 3total releases 35latest release October 11, 2021most recent commit 3 years agopypi neuro} Downloads
Cellfinder ⭐ 172
Automated 3D cell detection in very large images
dependent packages 2total releases 92latest release November 06, 2023most recent commit a month agopypi cellfinder} Downloads
The 6 Latest Releases In Neuroanatomy Open Source Projects
Cellfinder ⭐ 172
Automated 3D cell detection in very large images
dependent packages 2total releases 92latest release November 06, 2023most recent commit a month agopypi cellfinder} Downloads
Navis ⭐ 79
Python library for analysis of neuroanatomical data.
dependent packages 8total releases 32latest release July 28, 2023most recent commit 3 months agopypi navis} Downloads
Neuro ⭐ 11
Visualisation and analysis of brain imaging data
dependent packages 3total releases 35latest release October 11, 2021most recent commit 3 years agopypi neuro} Downloads
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