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The Top 18 Motif Discovery Open Source Projects

Open source projects categorized as Motif Discovery
Categories > Motif Discovery
Stumpy ⭐ 2,901
STUMPY is a powerful and scalable Python library for modern time series analysis
dependent packages 16total releases 28most recent commit 3 months agopypi stumpy} Downloads
Matrixprofile Ts ⭐ 556
A Python library for detecting patterns and anomalies in massive datasets using the Matrix Profile
dependent packages 2total releases 9most recent commit 4 years agopypi matrixprofile-ts} Downloads
Matrixprofile ⭐ 297
A Python 3 library making time series data mining tasks, utilizing matrix profile algorithms, accessible to everyone.
dependent packages 3total releases 14most recent commit a year agopypi matrixprofile} Downloads
Go Matrixprofile ⭐ 77
golang library for computing matrix profiles along with other time series analysis features
total releases 13most recent commit 4 years ago
Dotmotif ⭐ 65
A performant, powerful query framework to search for network motifs
total releases 12most recent commit 7 months ago
Motiflets ⭐ 36
Motiflets
total releases 13most recent commit 4 months ago
Matrixprofile.jl ⭐ 28
Time-series analysis using the Matrix profile in Julia
most recent commit 6 months ago
Motifmatchr ⭐ 17
Fast motif matching in R
most recent commit 6 years ago
Neurobind ⭐ 11
Yet Another Model Using Neural Networks for Predicting Binding Preferences of for Test DNA Sequences
most recent commit 7 years ago
Motifscan ⭐ 11
A motif discovery tool to detect the occurrences of known motifs
total releases 6most recent commit 3 years ago
Pyjaspar ⭐ 9
A Pythonic interface to query and access JASPAR transcription factor motifs
dependent packages 1total releases 9most recent commit 7 months agopypi pyjaspar} Downloads
Moca ⭐ 9
Ⓜ️ Tool for motif conservation analysis
most recent commit 2 years ago
Bindvae ⭐ 8
Variational Auto Encoders for learning binding signatures of transcription factors
most recent commit a year ago
Motif Classify ⭐ 8
Classify time series data using motifs discovered from Sequitur processing of SAX discretized data.
most recent commit 7 years ago
Stm ⭐ 6
Structural Temporal Modeling to characterize temporal networks
most recent commit 6 months ago
Rcas ⭐ 5
R package for the RNA Centric Annotation System (RCAS)
most recent commit 6 months ago
Bammmotif2 ⭐ 5
Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.
most recent commit 4 years ago
Peng Motif ⭐ 5
PEnG-motif is an open-source software package for searching statistically overrepresented motifs (position specific weight matrices, PWMs) in a set of DNA sequences.
most recent commit 4 years ago
The 4 Most Depended On Motif Discovery Open Source Projects
Stumpy ⭐ 2,901
STUMPY is a powerful and scalable Python library for modern time series analysis
dependent packages 16total releases 28latest release August 21, 2023most recent commit 3 months agopypi stumpy} Downloads
Matrixprofile ⭐ 297
A Python 3 library making time series data mining tasks, utilizing matrix profile algorithms, accessible to everyone.
dependent packages 3total releases 14latest release January 16, 2021most recent commit a year agopypi matrixprofile} Downloads
Matrixprofile Ts ⭐ 556
A Python library for detecting patterns and anomalies in massive datasets using the Matrix Profile
dependent packages 2total releases 9latest release August 08, 2019most recent commit 4 years agopypi matrixprofile-ts} Downloads
Pyjaspar ⭐ 9
A Pythonic interface to query and access JASPAR transcription factor motifs
dependent packages 1total releases 9latest release September 26, 2023most recent commit 7 months agopypi pyjaspar} Downloads
The 8 Latest Releases In Motif Discovery Open Source Projects
Motiflets ⭐ 36
Motiflets
total releases 13latest release October 25, 2023most recent commit 4 months ago
Pyjaspar ⭐ 9
A Pythonic interface to query and access JASPAR transcription factor motifs
dependent packages 1total releases 9latest release September 26, 2023most recent commit 7 months agopypi pyjaspar} Downloads
Stumpy ⭐ 2,901
STUMPY is a powerful and scalable Python library for modern time series analysis
dependent packages 16total releases 28latest release August 21, 2023most recent commit 3 months agopypi stumpy} Downloads
Dotmotif ⭐ 65
A performant, powerful query framework to search for network motifs
total releases 12latest release May 16, 2023most recent commit 7 months ago
Motifscan ⭐ 11
A motif discovery tool to detect the occurrences of known motifs
total releases 6latest release January 21, 2021most recent commit 3 years ago
Matrixprofile ⭐ 297
A Python 3 library making time series data mining tasks, utilizing matrix profile algorithms, accessible to everyone.
dependent packages 3total releases 14latest release January 16, 2021most recent commit a year agopypi matrixprofile} Downloads
Matrixprofile Ts ⭐ 556
A Python library for detecting patterns and anomalies in massive datasets using the Matrix Profile
dependent packages 2total releases 9latest release August 08, 2019most recent commit 4 years agopypi matrixprofile-ts} Downloads
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