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The Top 10 Microbiota Open Source Projects

Open source projects categorized as Microbiota
Categories > Microbiota
Tools Microbiome Analysis ⭐ 95
A list of R environment based tools for microbiome data exploration, statistical analysis and visualization
most recent commit a year ago
Microviz ⭐ 80
R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.
most recent commit 5 months ago
Micom ⭐ 73
Python package to study microbial communities using metabolic modeling.
dependent packages 1total releases 101most recent commit 6 months agopypi micom} Downloads
Ggpicrust2 ⭐ 59
Make Picrust2 Output Analysis and Visualization Easier
total releases 10most recent commit 5 months ago
Microbial Bioinformatics Introductory Course Material 2018 ⭐ 12
Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL
most recent commit 4 years ago
Framework ⭐ 10
Open-source opinionated Galaxy-based framework for microbiota analysis
most recent commit 3 years ago
16s Rdna V3 V4 ⭐ 8
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
most recent commit 3 years ago
Beexact ⭐ 5
Improved bee microbiota characterization using routine 16S rRNA gene sequencing 🐝🧬
most recent commit a year ago
Dysbiosisr ⭐ 5
The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
most recent commit 2 years ago
Ribotaxa ⭐ 5
RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties.
most recent commit 8 months ago
The 2 Latest Releases In Microbiota Open Source Projects
Ggpicrust2 ⭐ 59
Make Picrust2 Output Analysis and Visualization Easier
total releases 10latest release November 08, 2023most recent commit 5 months ago
Micom ⭐ 73
Python package to study microbial communities using metabolic modeling.
dependent packages 1total releases 101latest release October 29, 2023most recent commit 6 months agopypi micom} Downloads
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